Jiri Hon
| Snapshot Date: 2024-03-27 14:05:05 -0400 (Wed, 27 Mar 2024) |
| git_url: https://git.bioconductor.org/packages/triplex |
| git_branch: RELEASE_3_18 |
| git_last_commit: 440178d |
| git_last_commit_date: 2023-10-24 09:53:52 -0400 (Tue, 24 Oct 2023) |
| Back to Multiple platform build/check report for BioC 3.18: simplified long |
|
This page was generated on 2024-03-29 11:36:28 -0400 (Fri, 29 Mar 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4669 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" | 4404 |
| merida1 | macOS 12.7.1 Monterey | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4427 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2182/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| triplex 1.42.0 (landing page) Jiri Hon
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the triplex package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/triplex.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: triplex |
| Version: 1.42.0 |
| Command: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD INSTALL triplex |
| StartedAt: 2024-03-27 15:12:16 -0400 (Wed, 27 Mar 2024) |
| EndedAt: 2024-03-27 15:12:32 -0400 (Wed, 27 Mar 2024) |
| EllapsedTime: 15.2 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD INSTALL triplex ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.18-bioc/R/site-library’ * installing *source* package ‘triplex’ ... ** using staged installation ** libs using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ gcc -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/S4Vectors/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/IRanges/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/XVector/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -Wall -c Biostrings_stubs.c -o Biostrings_stubs.o gcc -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/S4Vectors/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/IRanges/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/XVector/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -Wall -c IRanges_stubs.c -o IRanges_stubs.o gcc -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/S4Vectors/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/IRanges/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/XVector/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -Wall -c R_init_triplex.c -o R_init_triplex.o gcc -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/S4Vectors/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/IRanges/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/XVector/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -Wall -c XVector_stubs.c -o XVector_stubs.o gcc -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/S4Vectors/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/IRanges/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/XVector/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -Wall -c align.c -o align.o gcc -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/S4Vectors/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/IRanges/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/XVector/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -Wall -c align_interface.c -o align_interface.o gcc -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/S4Vectors/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/IRanges/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/XVector/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -Wall -c dl_list.c -o dl_list.o gcc -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/S4Vectors/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/IRanges/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/XVector/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -Wall -c interval.c -o interval.o gcc -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/S4Vectors/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/IRanges/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/XVector/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -Wall -c libtriplex.c -o libtriplex.o gcc -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/S4Vectors/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/IRanges/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/XVector/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -Wall -c progress.c -o progress.o gcc -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/S4Vectors/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/IRanges/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/XVector/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -Wall -c search.c -o search.o gcc -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/S4Vectors/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/IRanges/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/XVector/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -Wall -c search_interface.c -o search_interface.o gcc -shared -L/home/biocbuild/bbs-3.18-bioc/R/lib -L/usr/local/lib -o triplex.so Biostrings_stubs.o IRanges_stubs.o R_init_triplex.o XVector_stubs.o align.o align_interface.o dl_list.o interval.o libtriplex.o progress.o search.o search_interface.o -L/home/biocbuild/bbs-3.18-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.18-bioc/R/site-library/00LOCK-triplex/00new/triplex/libs ** R ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import ‘grid::pattern’ by ‘Biostrings::pattern’ when loading ‘triplex’ ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import ‘grid::pattern’ by ‘Biostrings::pattern’ when loading ‘triplex’ ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location Warning: replacing previous import ‘grid::pattern’ by ‘Biostrings::pattern’ when loading ‘triplex’ ** testing if installed package keeps a record of temporary installation path * DONE (triplex)