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This page was generated on 2022-01-14 13:07:20 -0500 (Fri, 14 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4327
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4076
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for trena on tokay2


To the developers/maintainers of the trena package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/trena.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1998/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
trena 1.16.0  (landing page)
Paul Shannon
Snapshot Date: 2022-01-13 01:55:04 -0500 (Thu, 13 Jan 2022)
git_url: https://git.bioconductor.org/packages/trena
git_branch: RELEASE_3_14
git_last_commit: f742819
git_last_commit_date: 2021-10-26 12:35:29 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: trena
Version: 1.16.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/trena_1.16.0.tar.gz && rm -rf trena.buildbin-libdir && mkdir trena.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=trena.buildbin-libdir trena_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL trena_1.16.0.zip && rm trena_1.16.0.tar.gz trena_1.16.0.zip
StartedAt: 2022-01-13 07:03:13 -0500 (Thu, 13 Jan 2022)
EndedAt: 2022-01-13 07:06:31 -0500 (Thu, 13 Jan 2022)
EllapsedTime: 197.5 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/trena_1.16.0.tar.gz && rm -rf trena.buildbin-libdir && mkdir trena.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=trena.buildbin-libdir trena_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL trena_1.16.0.zip && rm trena_1.16.0.tar.gz trena_1.16.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 13 6899k   13  923k    0     0  1817k      0  0:00:03 --:--:--  0:00:03 1818k
 60 6899k   60 4159k    0     0  2725k      0  0:00:02  0:00:01  0:00:01 2725k
100 6899k  100 6899k    0     0  3302k      0  0:00:02  0:00:02 --:--:-- 3304k

install for i386

* installing *source* package 'trena' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
See system.file("LICENSE", package="MotifDb") for use restrictions.
** help
*** installing help indices
  converting help for package 'trena'
    finding HTML links ... done
    BayesSpikeSolver-class                  html  
    BayesSpikeSolver                        html  
    BicorSolver-class                       html  
    BicorSolver                             html  
    CandidateFilter-class                   html  
    EnsembleSolver-class                    html  
    EnsembleSolver                          html  
    FootprintFilter-class                   html  
    FootprintFinder-class                   html  
    GeneOntologyFilter-class                html  
    HumanDHSFilter-class                    html  
    LassoPVSolver-class                     html  
    LassoPVSolver                           html  
    LassoSolver-class                       html  
    LassoSolver                             html  
    MotifMatcher-class                      html  
    finding level-2 HTML links ... done

    PCAMax                                  html  
    PearsonSolver-class                     html  
    PearsonSolver                           html  
    RandomForestSolver-class                html  
    RandomForestSolver                      html  
    RidgeSolver-class                       html  
    RidgeSolver                             html  
    Solver-class                            html  
    SpearmanSolver-class                    html  
    SpearmanSolver                          html  
    Trena-class                             html  
    VarianceFilter-class                    html  
    XGBoostSolver-class                     html  
    XGBoostSolver                           html  
    addStats                                html  
    addStatsSimple                          html  
    assessSnp                               html  
    closeDatabaseConnections                html  
    createGeneModelFromRegulatoryRegions    html  
    createGeneModelFromTfList               html  
    elasticNetSolver                        html  
    findMatchesByChromosomalRegion          html  
    getAssayData                            html  
    getAvailableSolvers                     html  
    getCandidates-FootprintFilter-method    html  
    getCandidates-GeneOntologyFilter-method
                                            html  
    getCandidates-HumanDHSFilter-method     html  
    getCandidates-VarianceFilter-method     html  
    getCandidates                           html  
    getChromLoc                             html  
    getCoverage                             html  
    getEncodeRegulatoryTableNames-HumanDHSFilter
                                            html  
    getFootprintsForGene                    html  
    getFootprintsInRegion                   html  
    getGeneModelTableColumnNames            html  
    getGenePromoterRegion                   html  
    getGtfGeneBioTypes                      html  
    getGtfMoleculeTypes                     html  
    getPfms                                 html  
    getPromoterRegionsAllGenes              html  
    getProximalPromoter                     html  
    getRegulators                           html  
    getRegulatoryChromosomalRegions         html  
    getRegulatoryRegions                    html  
    getRegulatoryTableColumnNames           html  
    getSequence                             html  
    getSolverNames                          html  
    getTarget                               html  
    normalizeModel                          html  
    parseChromLocString                     html  
    parseDatabaseUri                        html  
    rescalePredictorWeights                 html  
    run                                     html  
    show-HumanDHSFilter-method              html  
    show.BayesSpikeSolver                   html  
    show.BicorSolver                        html  
    show.EnsembleSolver                     html  
    show.LassoPVSolver                      html  
    show.LassoSolver                        html  
    show.MotifMatcher                       html  
    show.PearsonSolver                      html  
    show.RandomForestSolver                 html  
    show.RidgeSolver                        html  
    show.SpearmanSolver                     html  
    show.XGBoostSolver                      html  
    solve.BayesSpike                        html  
    solve.Bicor                             html  
    solve.Ensemble                          html  
    solve.Lasso                             html  
    solve.LassoPV                           html  
    solve.Pearson                           html  
    solve.RandomForest                      html  
    solve.Ridge                             html  
    solve.Spearman                          html  
    solve.XGBoost                           html  
    trena-package                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
See system.file("LICENSE", package="MotifDb") for use restrictions.
** testing if installed package can be loaded from final location
See system.file("LICENSE", package="MotifDb") for use restrictions.
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'trena' ...
** testing if installed package can be loaded
See system.file("LICENSE", package="MotifDb") for use restrictions.
* MD5 sums
packaged installation of 'trena' as trena_1.16.0.zip
* DONE (trena)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'trena' successfully unpacked and MD5 sums checked