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This page was generated on 2022-01-17 13:07:09 -0500 (Mon, 17 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4328
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4077
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4138
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for tofsims on tokay2


To the developers/maintainers of the tofsims package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/tofsims.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1970/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
tofsims 1.22.0  (landing page)
Lorenz Gerber
Snapshot Date: 2022-01-16 01:55:05 -0500 (Sun, 16 Jan 2022)
git_url: https://git.bioconductor.org/packages/tofsims
git_branch: RELEASE_3_14
git_last_commit: 6cfbd33
git_last_commit_date: 2021-10-26 12:24:38 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: tofsims
Version: 1.22.0
Command: rm -rf tofsims.buildbin-libdir && mkdir tofsims.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=tofsims.buildbin-libdir tofsims_1.22.0.tar.gz
StartedAt: 2022-01-17 08:24:53 -0500 (Mon, 17 Jan 2022)
EndedAt: 2022-01-17 08:26:41 -0500 (Mon, 17 Jan 2022)
EllapsedTime: 107.7 seconds
RetCode: 0
Status:   OK  
PackageFile: tofsims_1.22.0.zip
PackageFileSize: 1.605 MiB

Command output

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###
### Running command:
###
###   rm -rf tofsims.buildbin-libdir && mkdir tofsims.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=tofsims.buildbin-libdir tofsims_1.22.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'tofsims' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c LapackEigen.cpp -o LapackEigen.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c c_importer.cpp -o c_importer.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c nn.cpp -o nn.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c readRawPhi.cpp -o readRawPhi.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c utilities.cpp -o utilities.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o tofsims.dll tmp.def LapackEigen.o RcppExports.o c_importer.o nn.o readRawPhi.o utilities.o -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lRlapack -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/tofsims.buildbin-libdir/00LOCK-tofsims/00new/tofsims/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'tofsims'
    finding HTML links ... done
    EigenDecompose                          html  
    LapackGenEigen                          html  
    MAF                                     html  
    MCR                                     html  
    MNF                                     html  
    MassImage                               html  
    MassSpectra                             html  
    PCA-class                               html  
    PCAnalysis                              html  
    PeakList                                html  
    PrComp                                  html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/tofsims.buildbin-libdir/00LOCK-tofsims/00new/tofsims/help/prComp.html
    PrinComp                                html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/tofsims.buildbin-libdir/00LOCK-tofsims/00new/tofsims/help/prinComp.html
    RSS-MCR-method                          html  
    RSS                                     html  
    SNR                                     html  
    addFixedWidth                           html  
    addPeaks                                html  
    analysis                                html  
    finding level-2 HTML links ... done

    analysisName                            html  
    baseObject-PrComp-method                html  
    baseObject-PrinComp-method              html  
    baseObject                              html  
    binning                                 html  
    bwApply                                 html  
    cReadRawPhi                             html  
    calibPointNew                           html  
    calibPoints                             html  
    calibration                             html  
    changePeakWidth                         html  
    check.extension                         html  
    computeMNF                              html  
    computeNoise                            html  
    coordToPixel-MassImage-numeric-method   html  
    coordToPixel                            html  
    covDiffCalc                             html  
    ctable                                  html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/tofsims.buildbin-libdir/00LOCK-tofsims/00new/tofsims/help/cTable.html
    dim-MassImage-method                    html  
    dim-MassSpectra-method                  html  
    extract.header.data                     html  
    findClosestMatch                        html  
    findPeakWidth                           html  
    getTOFs                                 html  
    image                                   html  
    imageMatrix                             html  
    import                                  html  
    import.raw                              html  
    instrument                              html  
    iters-MCR-method                        html  
    iters                                   html  
    itzipName-set                           html  
    itzipName                               html  
    legend.col                              html  
    look.for.itzip.property                 html  
    makeTIC-MassSpectra-method              html  
    makeTIC                                 html  
    manualSelectPeaks                       html  
    mz                                      html  
    nComp                                   html  
    nPeaks                                  html  
    ndim-MassSpectra-method                 html  
    ndim                                    html  
    nearestNeighbourMean                    html  
    nnMNF                                   html  
    nnMean                                  html  
    noPlottingData-PCA-method               html  
    noPlottingData                          html  
    nz                                      html  
    overlayPlot                             html  
    parIndicesSearch                        html  
    pcaLoadings                             html  
    pcaMAF                                  html  
    pcaScores                               html  
    peakIDs                                 html  
    peakMzs                                 html  
    peakPick                                html  
    peakWidths                              html  
    peaks2Spectra                           html  
    plot-MassImage-missing-method           html  
    plot-PeakList-missing-method            html  
    plot                                    html  
    points                                  html  
    poissonScaling                          html  
    readBIF                                 html  
    recalibrate                             html  
    reduceSpectrumResolution                html  
    removePeaks                             html  
    resids-MCR-method                       html  
    resids                                  html  
    scale                                   html  
    show-MassImage-method                   html  
    show-MassSpectra-method                 html  
    show-PeakList-method                    html  
    smoothScatter                           html  
    smootherGolay                           html  
    smootherSpline                          html  
    subset                                  html  
    tofsims-package                         html  
    unitMassPeaks                           html  
    validMassImageObject                    html  
    validMassSpectraObject                  html  
    validPCAObject                          html  
    validPeakListObject                     html  
    xdim-MassImage-method                   html  
    xdim-PCA-method                         html  
    xdim-set                                html  
    xdim                                    html  
    xy                                      html  
    xySpec                                  html  
    ydim-MassImage-method                   html  
    ydim-PCA-method                         html  
    ydim-set                                html  
    ydim                                    html  
    zdim-MassSpectra-method                 html  
    zdim                                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'tofsims' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c LapackEigen.cpp -o LapackEigen.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c c_importer.cpp -o c_importer.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c nn.cpp -o nn.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c readRawPhi.cpp -o readRawPhi.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c utilities.cpp -o utilities.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o tofsims.dll tmp.def LapackEigen.o RcppExports.o c_importer.o nn.o readRawPhi.o utilities.o -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lRlapack -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/tofsims.buildbin-libdir/tofsims/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'tofsims' as tofsims_1.22.0.zip
* DONE (tofsims)