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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:structToolbox.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings structToolbox_1.15.1.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/structToolbox.Rcheck’
* using R Under development (unstable) (2024-01-16 r85808)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘structToolbox/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘structToolbox’ version ‘1.15.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘structToolbox’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘structToolbox-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: glog_opt_plot
> ### Title: Glog optimisation
> ### Aliases: glog_opt_plot
> 
> ### ** Examples
> 
> M = glog_opt_plot(
+       plot_grid = numeric(0))
> 
> D = iris_DatasetExperiment()
> M = glog_transform(qc_label='versicolor',factor_name='Species')
> M = model_apply(M,D)
Error!Lambda tending to infinity! Using standard
Error!Lambda tending to infinity! Using standard
> C = glog_opt_plot()
> chart_plot(C,M,D)
Error in `geom_line()`:
! Problem while computing aesthetics.
ℹ Error occurred in the 2nd layer.
Caused by error in `data[["lambda"]]`:
! object of type 'closure' is not subsettable
Backtrace:
     ▆
  1. ├─base (local) `<fn>`(x)
  2. ├─ggplot2:::print.ggplot(x)
  3. │ ├─ggplot2::ggplot_build(x)
  4. │ └─ggplot2:::ggplot_build.ggplot(x)
  5. │   └─ggplot2:::by_layer(...)
  6. │     ├─rlang::try_fetch(...)
  7. │     │ ├─base::tryCatch(...)
  8. │     │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
  9. │     │ │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 10. │     │ │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
 11. │     │ └─base::withCallingHandlers(...)
 12. │     └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
 13. │       └─l$compute_aesthetics(d, plot)
 14. │         └─ggplot2 (local) compute_aesthetics(..., self = self)
 15. │           └─base::lapply(aesthetics, eval_tidy, data = data, env = env)
 16. │             └─rlang (local) FUN(X[[i]], ...)
 17. └─rlang (local) `<fn>`(`<ntSbsttE>`)
 18.   └─handlers[[1L]](cnd)
 19.     └─cli::cli_abort(...)
 20.       └─rlang::abort(...)
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR
See
  ‘/Users/biocbuild/bbs-3.19-bioc/meat/structToolbox.Rcheck/00check.log’
for details.