Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-01-17 13:07:06 -0500 (Mon, 17 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4328
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4077
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4138
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for stageR on tokay2


To the developers/maintainers of the stageR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/stageR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1883/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
stageR 1.16.0  (landing page)
Koen Van den Berge
Snapshot Date: 2022-01-16 01:55:05 -0500 (Sun, 16 Jan 2022)
git_url: https://git.bioconductor.org/packages/stageR
git_branch: RELEASE_3_14
git_last_commit: 816d3b2
git_last_commit_date: 2021-10-26 12:39:22 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: stageR
Version: 1.16.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/stageR_1.16.0.tar.gz && rm -rf stageR.buildbin-libdir && mkdir stageR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=stageR.buildbin-libdir stageR_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL stageR_1.16.0.zip && rm stageR_1.16.0.tar.gz stageR_1.16.0.zip
StartedAt: 2022-01-16 05:31:54 -0500 (Sun, 16 Jan 2022)
EndedAt: 2022-01-16 05:33:11 -0500 (Sun, 16 Jan 2022)
EllapsedTime: 77.7 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/stageR_1.16.0.tar.gz && rm -rf stageR.buildbin-libdir && mkdir stageR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=stageR.buildbin-libdir stageR_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL stageR_1.16.0.zip && rm stageR_1.16.0.tar.gz stageR_1.16.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  910k  100  910k    0     0  3515k      0 --:--:-- --:--:-- --:--:-- 3529k

install for i386

* installing *source* package 'stageR' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'stageR'
    finding HTML links ... done
    adjustedAlphaLevel                      html  
    esetProstate                            html  
    getAdjustedPValues                      html  
    finding level-2 HTML links ... done

Rd warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpQXQSiO/R.INSTALL1e50430a1a90/stageR/man/getAdjustedPValues.Rd:34: missing link 'stageWiseAdjustment,stageR,character,numeric-method'
    getAlpha                                html  
    getMethod                               html  
    getPConfirmation                        html  
    getPScreen                              html  
    getResults                              html  
    getSignificantGenes                     html  
    getSignificantTx                        html  
    getTx2gene                              html  
    hammer.eset                             html  
    isAdjusted                              html  
    isPScreenAdjusted                       html  
    stageR                                  html  
    stageRClass                             html  
Rd warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpQXQSiO/R.INSTALL1e50430a1a90/stageR/man/stageRClass.Rd:19: missing link 'getAdjustedPValues,stageR,logical,logical-method'
Rd warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpQXQSiO/R.INSTALL1e50430a1a90/stageR/man/stageRClass.Rd:19: missing link 'getResults,stageR-method'
    stageRTx                                html  
    stageWiseAdjustment                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'stageR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'stageR' as stageR_1.16.0.zip
* DONE (stageR)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'stageR' successfully unpacked and MD5 sums checked