############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data scuttle ### ############################################################################## ############################################################################## * checking for file ‘scuttle/DESCRIPTION’ ... OK * preparing ‘scuttle’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘misc.Rmd’ using rmarkdown Quitting from lines 124-133 [unnamed-chunk-8] (misc.Rmd) Error: processing vignette 'misc.Rmd' failed with diagnostics: failed to load resource name: AH73905 title: Ensembl 97 EnsDb for Mus musculus reason: Required tables gene, tx, tx2exon, exon, chromosome are not present in the database! --- failed re-building ‘misc.Rmd’ --- re-building ‘norm.Rmd’ using rmarkdown Warning: call dbDisconnect() when finished working with a connection --- finished re-building ‘norm.Rmd’ --- re-building ‘qc.Rmd’ using rmarkdown --- finished re-building ‘qc.Rmd’ SUMMARY: processing the following file failed: ‘misc.Rmd’ Error: Vignette re-building failed. Execution halted