Back to Multiple platform build/check report for BioC 3.14
ABCDEFGHIJKLMNOPQR[S]TUVWXYZ

This page was generated on 2022-01-19 13:07:21 -0500 (Wed, 19 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4328
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4077
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4138
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for scShapes on tokay2


To the developers/maintainers of the scShapes package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/scShapes.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1746/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
scShapes 1.0.0  (landing page)
Malindrie Dharmaratne
Snapshot Date: 2022-01-18 01:55:07 -0500 (Tue, 18 Jan 2022)
git_url: https://git.bioconductor.org/packages/scShapes
git_branch: RELEASE_3_14
git_last_commit: b8dd5db
git_last_commit_date: 2021-10-26 13:11:18 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: scShapes
Version: 1.0.0
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:scShapes.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings scShapes_1.0.0.tar.gz
StartedAt: 2022-01-19 02:14:27 -0500 (Wed, 19 Jan 2022)
EndedAt: 2022-01-19 02:32:58 -0500 (Wed, 19 Jan 2022)
EllapsedTime: 1111.0 seconds
RetCode: 0
Status:   OK  
CheckDir: scShapes.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:scShapes.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings scShapes_1.0.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/scShapes.Rcheck'
* using R version 4.1.2 (2021-11-01)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'scShapes/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'scShapes' version '1.0.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'scShapes' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
model_param  18.70   4.33   78.35
fit_models   16.96   5.12   57.00
gof_model    16.98   4.31   76.56
select_model 17.20   4.00   76.33
model_bic    15.63   4.47   53.25
lbic_model   15.06   3.99   53.96
ks_sig        0.46   0.00   29.62
ks_test       0.40   0.01   28.32
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
model_param  19.40   4.22  112.94
gof_model    18.01   3.93   81.88
select_model 17.58   4.27  139.81
fit_models   16.42   4.35   56.48
model_bic    15.06   4.20   54.96
lbic_model   14.91   3.63   53.43
ks_sig        0.68   0.00   27.98
ks_test       0.33   0.03   29.04
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

scShapes.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/scShapes_1.0.0.tar.gz && rm -rf scShapes.buildbin-libdir && mkdir scShapes.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=scShapes.buildbin-libdir scShapes_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL scShapes_1.0.0.zip && rm scShapes_1.0.0.tar.gz scShapes_1.0.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 47598  100 47598    0     0   432k      0 --:--:-- --:--:-- --:--:--  438k

install for i386

* installing *source* package 'scShapes' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'scShapes'
    finding HTML links ... done
    change_shape                            html  
    filter_counts                           html  
    fit_models                              html  
    gof_model                               html  
    ks_sig                                  html  
    ks_test                                 html  
    lbic_model                              html  
    logo                                    html  
    model_bic                               html  
    model_param                             html  
    scData                                  html  
    select_model                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'scShapes' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'scShapes' as scShapes_1.0.0.zip
* DONE (scShapes)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'scShapes' successfully unpacked and MD5 sums checked

Tests output

scShapes.Rcheck/tests_i386/testthat.Rout


R version 4.1.2 (2021-11-01) -- "Bird Hippie"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> Sys.setenv("R_TESTS" = "")
> 
> library(testthat)
> library(scShapes)
> 
> test_check("scShapes")
            ____
          |     |
____ ____ |____ |____ ____ ____ ____  ____
[__  |        | |   | ___| |   ||___] [__
___] |___ ____| |   ||___| |___||___  ___]
                           |
                           |

== Skipped tests ===============================================================
* empty test (1)

[ FAIL 0 | WARN 0 | SKIP 1 | PASS 0 ]
> 
> proc.time()
   user  system elapsed 
   3.03    0.20    3.21 

scShapes.Rcheck/tests_x64/testthat.Rout


R version 4.1.2 (2021-11-01) -- "Bird Hippie"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> Sys.setenv("R_TESTS" = "")
> 
> library(testthat)
> library(scShapes)
> 
> test_check("scShapes")
            ____
          |     |
____ ____ |____ |____ ____ ____ ____  ____
[__  |        | |   | ___| |   ||___] [__
___] |___ ____| |   ||___| |___||___  ___]
                           |
                           |

== Skipped tests ===============================================================
* empty test (1)

[ FAIL 0 | WARN 0 | SKIP 1 | PASS 0 ]
> 
> proc.time()
   user  system elapsed 
   2.37    0.17    2.53 

Example timings

scShapes.Rcheck/examples_i386/scShapes-Ex.timings

nameusersystemelapsed
filter_counts0.650.040.69
fit_models16.96 5.1257.00
gof_model16.98 4.3176.56
ks_sig 0.46 0.0029.62
ks_test 0.40 0.0128.32
lbic_model15.06 3.9953.96
model_bic15.63 4.4753.25
model_param18.70 4.3378.35
scData0.020.000.01
select_model17.20 4.0076.33

scShapes.Rcheck/examples_x64/scShapes-Ex.timings

nameusersystemelapsed
filter_counts0.790.010.80
fit_models16.42 4.3556.48
gof_model18.01 3.9381.88
ks_sig 0.68 0.0027.98
ks_test 0.33 0.0329.04
lbic_model14.91 3.6353.43
model_bic15.06 4.2054.96
model_param 19.40 4.22112.94
scData0.020.000.02
select_model 17.58 4.27139.81