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This page was generated on 2024-03-04 11:36:51 -0500 (Mon, 04 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.3.2 Patched (2023-11-13 r85521) -- "Eye Holes" 4692
palomino4Windows Server 2022 Datacenterx644.3.2 (2023-10-31 ucrt) -- "Eye Holes" 4445
lconwaymacOS 12.7.1 Montereyx86_644.3.2 Patched (2023-11-01 r85457) -- "Eye Holes" 4466
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1740/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rhdf5 2.46.1  (landing page)
Mike Smith
Snapshot Date: 2024-03-03 14:05:05 -0500 (Sun, 03 Mar 2024)
git_url: https://git.bioconductor.org/packages/rhdf5
git_branch: RELEASE_3_18
git_last_commit: 27bab89
git_last_commit_date: 2023-11-29 10:28:25 -0500 (Wed, 29 Nov 2023)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.1 Ventura / arm64see weekly results here

INSTALL results for rhdf5 on palomino4


To the developers/maintainers of the rhdf5 package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rhdf5.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: rhdf5
Version: 2.46.1
Command: F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL rhdf5
StartedAt: 2024-03-03 15:36:36 -0500 (Sun, 03 Mar 2024)
EndedAt: 2024-03-03 15:37:30 -0500 (Sun, 03 Mar 2024)
EllapsedTime: 53.8 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL rhdf5
###
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* installing to library 'F:/biocbuild/bbs-3.18-bioc/R/library'
* installing *source* package 'rhdf5' ...
** using staged installation
** libs
Warning: this package has a non-empty 'configure.win' file,
so building only the main architecture

using C compiler: 'gcc.exe (GCC) 12.3.0'
using C++ compiler: 'G__~1.EXE (GCC) 12.3.0'
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c H5.c -o H5.o
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c H5A.c -o H5A.o
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c H5D.c -o H5D.o
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c H5E.c -o H5E.o
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c H5F.c -o H5F.o
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c H5G.c -o H5G.o
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c H5I.c -o H5I.o
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c H5L.c -o H5L.o
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c H5O.c -o H5O.o
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c H5P.c -o H5P.o
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c H5R.c -o H5R.o
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c H5S.c -o H5S.o
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c H5S_extras.c -o H5S_extras.o
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c H5T.c -o H5T.o
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c H5T_extras.c -o H5T_extras.o
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c H5Z.c -o H5Z.o
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c H5constants.c -o H5constants.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c HandleList.cpp -o HandleList.o
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c HandleListWrap.c -o HandleListWrap.o
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c bit64conversion.c -o bit64conversion.o
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c external_filters.c -o external_filters.o
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c h5dump.c -o h5dump.o
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c h5ls.c -o h5ls.o
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c h5testLock.c -o h5testLock.o
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c h5writeDataFrame.c -o h5writeDataFrame.o
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c printdatatype.c -o printdatatype.o
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c utils.c -o utils.o
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c wrap.c -o wrap.o
g++ -std=gnu++17 -shared -s -static-libgcc -o rhdf5.dll tmp.def H5.o H5A.o H5D.o H5E.o H5F.o H5G.o H5I.o H5L.o H5O.o H5P.o H5R.o H5S.o H5S_extras.o H5T.o H5T_extras.o H5Z.o H5constants.o HandleList.o HandleListWrap.o bit64conversion.o external_filters.o h5dump.o h5ls.o h5testLock.o h5writeDataFrame.o printdatatype.o utils.o wrap.o -LF:/biocbuild/bbs-3.18-bioc/R/library/Rhdf5lib/lib/x64-ucrt -lhdf5 -lcurl -lssh2 -lssl -lcrypto -lwldap32 -lws2_32 -lcrypt32 -lsz -laec -lz -lpsapi -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.18-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.18-bioc/R/library/00LOCK-rhdf5/00new/rhdf5/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rhdf5)