Multiple platform build/check report for BioC 3.12 - BUILD report for proFIA on tokay1

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### Running command:
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###   chmod a+r proFIA -R && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data proFIA
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* checking for file 'proFIA/DESCRIPTION' ... OK
* preparing 'proFIA':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'proFIA-vignette.Rmd' using rmarkdown
Loading required package: xcms
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: BiocParallel
Loading required package: MSnbase
Loading required package: mzR
Loading required package: Rcpp
Loading required package: S4Vectors
Loading required package: stats4

Attaching package: 'S4Vectors'

The following object is masked from 'package:base':

    expand.grid

Loading required package: ProtGenerics

Attaching package: 'ProtGenerics'

The following object is masked from 'package:stats':

    smooth


This is MSnbase version 2.16.1 
  Visit https://lgatto.github.io/MSnbase/ to get started.


Attaching package: 'MSnbase'

The following object is masked from 'package:base':

    trimws


This is xcms version 3.12.0 


Attaching package: 'xcms'

The following object is masked from 'package:stats':

    sigma

1 directories have been found : mzML

6 files found in directories mzML
 
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Beginning band detection for C100A

Create profile matrix with method 'bin' and step 1 ... OK
Beginning band detection for C100B

Create profile matrix with method 'bin' and step 1 ... OK
Beginning band detection for C10A

Create profile matrix with method 'bin' and step 1 ... OK
Beginning band detection for C10B

Create profile matrix with method 'bin' and step 1 ... OK
Beginning band detection for C1A

Create profile matrix with method 'bin' and step 1 ... OK
Beginning band detection for C1B

Create profile matrix with method 'bin' and step 1 ... OK
processing: C:/Users/biocbuild/bbs-3.12-bioc/R/library/plasFIA/mzML/C100A.mzML

Quitting from lines 94-99 (proFIA-vignette.Rmd) 
Error: processing vignette 'proFIA-vignette.Rmd' failed with diagnostics:
argument "f" is missing, with no default
--- failed re-building 'proFIA-vignette.Rmd'

SUMMARY: processing the following file failed:
  'proFIA-vignette.Rmd'

Error: Vignette re-building failed.
Execution halted
BUILD report for proFIA on tokay1

Summary

Command output
