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### Running command:
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###   /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD check --install=check:peakPantheR.install-out.txt --library=/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library --no-vignettes --timings peakPantheR_1.18.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.19-bioc/meat/peakPantheR.Rcheck’
* using R version 4.4.0 beta (2024-04-15 r86425)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    gcc (GCC) 10.3.1
    GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘peakPantheR/DESCRIPTION’ ... OK
* this is package ‘peakPantheR’ version ‘1.18.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘peakPantheR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                                          user system elapsed
peakPantheR_ROIStatistics                               25.057  0.288  25.402
peakPantheR_parallelAnnotation                          18.603  0.148  18.781
outputAnnotationDiagnostic-peakPantheRAnnotation-method 18.051  0.292  18.432
outputAnnotationResult-peakPantheRAnnotation-method     17.678  0.183  17.883
EICs-peakPantheRAnnotation-method                       15.366  0.842  16.265
retentionTimeCorrection-peakPantheRAnnotation-method    12.391  0.080  12.496
peakPantheR_singleFileSearch                             6.335  0.048   6.395
peakPantheR_quickEIC                                     5.380  0.008   5.397
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  Error: Test failures
  In addition: Warning messages:
  1: In .Internal(gc(verbose, reset, full)) :
    closing unused connection 10 (/home/biocbuild/tmp/RtmppfHijy/notValidXML.mzML)
  2: In .Internal(gc(verbose, reset, full)) :
    closing unused connection 9 (/home/biocbuild/tmp/RtmppfHijy/notValidXML.mzML)
  3: In .Internal(gc(verbose, reset, full)) :
    closing unused connection 8 (/home/biocbuild/tmp/RtmppfHijy/notValidXML.mzML)
  4: In .Internal(gc(verbose, reset, full)) :
    closing unused connection 7 (/home/biocbuild/tmp/RtmppfHijy/notValidXML.mzML)
  5: In .Internal(gc(verbose, reset, full)) :
    closing unused connection 6 (/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/peakPantheR/extdata/test_fakemzML.mzML)
  6: In .Internal(gc(verbose, reset, full)) :
    closing unused connection 5 (/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/peakPantheR/extdata/test_fakemzML.mzML)
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR
See
  ‘/home/biocbuild/bbs-3.19-bioc/meat/peakPantheR.Rcheck/00check.log’
for details.