Back to Multiple platform build/check report for BioC 3.16
ABCDEFGHIJKL[M]NOPQRSTUVWXYZ

This page was generated on 2022-11-30 11:06:01 -0500 (Wed, 30 Nov 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.2 (2022-10-31) -- "Innocent and Trusting" 4503
palomino4Windows Server 2022 Datacenterx644.2.2 (2022-10-31 ucrt) -- "Innocent and Trusting" 4278
lconwaymacOS 12.5.1 Montereyx86_644.2.2 (2022-10-31) -- "Innocent and Trusting" 4309
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for motifbreakR on nebbiolo2


To the developers/maintainers of the motifbreakR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/motifbreakR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1254/2183HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
motifbreakR 2.12.0  (landing page)
Simon Gert Coetzee
Snapshot Date: 2022-11-29 14:00:04 -0500 (Tue, 29 Nov 2022)
git_url: https://git.bioconductor.org/packages/motifbreakR
git_branch: RELEASE_3_16
git_last_commit: c0786cf
git_last_commit_date: 2022-11-01 11:12:10 -0500 (Tue, 01 Nov 2022)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    ERROR  skipped
palomino4Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.5.1 Monterey / x86_64  OK    ERROR  skippedskipped

Summary

Package: motifbreakR
Version: 2.12.0
Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data motifbreakR
StartedAt: 2022-11-29 17:13:42 -0500 (Tue, 29 Nov 2022)
EndedAt: 2022-11-29 17:15:20 -0500 (Tue, 29 Nov 2022)
EllapsedTime: 97.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data motifbreakR
###
##############################################################################
##############################################################################


* checking for file ‘motifbreakR/DESCRIPTION’ ... OK
* preparing ‘motifbreakR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘motifbreakR-vignette.Rmd’ using rmarkdown
Loading required package: grid
Loading required package: MotifDb
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append, as.data.frame,
    basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep,
    grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax,
    pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Loading required package: S4Vectors
Loading required package: stats4

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    I, expand.grid, unname

Loading required package: IRanges
Loading required package: GenomicRanges
Loading required package: GenomeInfoDb
Loading required package: Biostrings
Loading required package: XVector

Attaching package: 'Biostrings'

The following object is masked from 'package:grid':

    pattern

The following object is masked from 'package:base':

    strsplit

See system.file("LICENSE", package="MotifDb") for use restrictions.

Loading required package: rtracklayer
Quitting from lines 105-112 (motifbreakR-vignette.Rmd) 
Error: processing vignette 'motifbreakR-vignette.Rmd' failed with diagnostics:
there is no package called 'SNPlocs.Hsapiens.dbSNP142.GRCh37'
--- failed re-building ‘motifbreakR-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘motifbreakR-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted