Back to Multiple platform build/check report for BioC 3.16
ABCDEFGHIJKL[M]NOPQRSTUVWXYZ

This page was generated on 2023-01-28 11:07:00 -0500 (Sat, 28 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.2 (2022-10-31) -- "Innocent and Trusting" 4510
palomino4Windows Server 2022 Datacenterx644.2.2 (2022-10-31 ucrt) -- "Innocent and Trusting" 4288
lconwaymacOS 12.5.1 Montereyx86_644.2.2 (2022-10-31) -- "Innocent and Trusting" 4317
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for metahdep on palomino4


To the developers/maintainers of the metahdep package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/metahdep.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1151/2183HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
metahdep 1.56.0  (landing page)
John R. Stevens
Snapshot Date: 2023-01-27 14:00:04 -0500 (Fri, 27 Jan 2023)
git_url: https://git.bioconductor.org/packages/metahdep
git_branch: RELEASE_3_16
git_last_commit: 97ce24c
git_last_commit_date: 2022-11-01 11:04:19 -0500 (Tue, 01 Nov 2022)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
lconwaymacOS 12.5.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: metahdep
Version: 1.56.0
Command: F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL metahdep
StartedAt: 2023-01-27 15:50:01 -0500 (Fri, 27 Jan 2023)
EndedAt: 2023-01-27 15:50:19 -0500 (Fri, 27 Jan 2023)
EllapsedTime: 18.1 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL metahdep
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.16-bioc/R/library'
* installing *source* package 'metahdep' ...
** using staged installation
** libs
gcc  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c metahdep.c -o metahdep.o
In file included from metahdep.c:3:
metahdep.c: In function 'get_row_indices2':
F:/biocbuild/bbs-3.16-bioc/R/include/Rinternals.h:197:17: warning: passing argument 5 of 'metan_binary_search_unique' makes integer from pointer without a cast [-Wint-conversion]
  197 | #define CHAR(x) R_CHAR(x)
      |                 ^~~~~~~~~
      |                 |
      |                 const char *
metahdep.c:471:79: note: in expansion of macro 'CHAR'
  471 |     index = metan_binary_search_unique(name_list, sort_index, R_old_names, j, CHAR(STRING_ELT(R_old_chipsets, j)), i);
      |                                                                               ^~~~
metahdep.c:372:103: note: expected 'char' but argument is of type 'const char *'
  372 | SEXP metan_binary_search_unique(SEXP name_list, SEXP sort_index, SEXP gene_name, int gene_index, char chipset_name, int study_num)
      |                                                                                                  ~~~~~^~~~~~~~~~~~
gcc -shared -s -static-libgcc -o metahdep.dll tmp.def metahdep.o -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.16-bioc/R/library/00LOCK-metahdep/00new/metahdep/libs/x64
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (metahdep)