##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf mbkmeans.buildbin-libdir && mkdir mbkmeans.buildbin-libdir && F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL --build --library=mbkmeans.buildbin-libdir mbkmeans_1.18.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'mbkmeans' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 12.3.0'
using C++11
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.18-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rhdf5lib/include' -I'F:/biocbuild/bbs-3.18-bioc/R/library/beachmat/include' -I'F:/biocbuild/bbs-3.18-bioc/R/library/ClusterR/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.18-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rhdf5lib/include' -I'F:/biocbuild/bbs-3.18-bioc/R/library/beachmat/include' -I'F:/biocbuild/bbs-3.18-bioc/R/library/ClusterR/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c mini_batch.cpp -o mini_batch.o
In file included from F:/biocbuild/bbs-3.18-bioc/R/library/RcppArmadillo/include/armadillo:26,
                 from F:/biocbuild/bbs-3.18-bioc/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from F:/biocbuild/bbs-3.18-bioc/R/library/RcppArmadillo/include/RcppArmadillo.h:29,
                 from mini_batch.cpp:2:
F:/biocbuild/bbs-3.18-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:321:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed'
  321 |   #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
      |                                                                                      ^
F:/biocbuild/bbs-3.18-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:326:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead'
  326 |     #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
      |                                                                           ^
F:/biocbuild/bbs-3.18-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:329:61: note: '#pragma message: INFO: see the documentation for details'
  329 |   #pragma message ("INFO: see the documentation for details")
      |                                                             ^
In file included from mini_batch.cpp:3:
F:/biocbuild/bbs-3.18-bioc/R/library/ClusterR/include/ClusterRHeader.h: In member function 'arma::mat clustR::ClustHeader::KMEANS_arma(arma::mat&, int, int, bool, std::string, Rcpp::Nullable<Rcpp::Matrix<14> >, int)':
F:/biocbuild/bbs-3.18-bioc/R/library/ClusterR/include/ClusterRHeader.h:862:14: warning: variable 'status' set but not used [-Wunused-but-set-variable]
  862 |         bool status;
      |              ^~~~~~
F:/biocbuild/bbs-3.18-bioc/R/library/ClusterR/include/ClusterRHeader.h: In instantiation of 'T clustR::ClustHeader::GMM_arma_covariance_type(T, arma::mat&, int, std::string, std::string, int, int, bool, double, int) [with T = arma::gmm_priv::gmm_full<double>; arma::mat = arma::Mat<double>; std::string = std::__cxx11::basic_string<char>]':
F:/biocbuild/bbs-3.18-bioc/R/library/ClusterR/include/ClusterRHeader.h:1592:65:   required from here
F:/biocbuild/bbs-3.18-bioc/R/library/ClusterR/include/ClusterRHeader.h:1530:14: warning: variable 'status' set but not used [-Wunused-but-set-variable]
 1530 |         bool status;
      |              ^~~~~~
F:/biocbuild/bbs-3.18-bioc/R/library/ClusterR/include/ClusterRHeader.h: In instantiation of 'T clustR::ClustHeader::GMM_arma_covariance_type(T, arma::mat&, int, std::string, std::string, int, int, bool, double, int) [with T = arma::gmm_priv::gmm_diag<double>; arma::mat = arma::Mat<double>; std::string = std::__cxx11::basic_string<char>]':
F:/biocbuild/bbs-3.18-bioc/R/library/ClusterR/include/ClusterRHeader.h:1626:65:   required from here
F:/biocbuild/bbs-3.18-bioc/R/library/ClusterR/include/ClusterRHeader.h:1530:14: warning: variable 'status' set but not used [-Wunused-but-set-variable]
g++ -shared -s -static-libgcc -o mbkmeans.dll tmp.def RcppExports.o mini_batch.o -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.18-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.18-bioc/meat/mbkmeans.buildbin-libdir/00LOCK-mbkmeans/00new/mbkmeans/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'mbkmeans' as mbkmeans_1.18.0.zip
* DONE (mbkmeans)