Back to Multiple platform build/check report for BioC 3.16: simplified long 

This page was generated on 20230329 11:05:09 0400 (Wed, 29 Mar 2023).
Hostname  OS  Arch (*)  R version  Installed pkgs 

nebbiolo2  Linux (Ubuntu 20.04.5 LTS)  x86_64  4.2.3 (20230315)  "Shortstop Beagle"  4482 
palomino4  Windows Server 2022 Datacenter  x64  4.2.3 (20230315 ucrt)  "Shortstop Beagle"  4278 
lconway  macOS 12.5.1 Monterey  x86_64  4.2.3 (20230315)  "Shortstop Beagle"  4306 
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To the developers/maintainers of the matter package:  Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/matter.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.  Make sure to use the following settings in order to reproduce any error or warning you see on this page. 
Package 1107/2183  Hostname  OS / Arch  INSTALL  BUILD  CHECK  BUILD BIN  
matter 2.0.1 (landing page) Kylie A. Bemis
 nebbiolo2  Linux (Ubuntu 20.04.5 LTS) / x86_64  OK  OK  OK  
palomino4  Windows Server 2022 Datacenter / x64  OK  OK  OK  OK  
lconway  macOS 12.5.1 Monterey / x86_64  OK  OK  OK  OK  
Package: matter 
Version: 2.0.1 
Command: /home/biocbuild/bbs3.16bioc/R/bin/R CMD check install=check:matter.installout.txt library=/home/biocbuild/bbs3.16bioc/R/sitelibrary timings matter_2.0.1.tar.gz 
StartedAt: 20230327 21:48:44 0400 (Mon, 27 Mar 2023) 
EndedAt: 20230327 21:50:03 0400 (Mon, 27 Mar 2023) 
EllapsedTime: 79.0 seconds 
RetCode: 0 
Status: OK 
CheckDir: matter.Rcheck 
Warnings: 0 
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs3.16bioc/R/bin/R CMD check install=check:matter.installout.txt library=/home/biocbuild/bbs3.16bioc/R/sitelibrary timings matter_2.0.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs3.16bioc/meat/matter.Rcheck’ * using R version 4.2.3 (20230315) * using platform: x86_64pclinuxgnu (64bit) * using session charset: UTF8 * checking for file ‘matter/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘matter’ version ‘2.0.1’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘matter’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION metainformation ... OK * checking toplevel files ... OK * checking for leftover files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for nonASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd crossreferences ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... NOTE Note: information on .o files is not available * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘matter2guide.Rmd’ using ‘UTF8’... OK NONE * checking rebuilding of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs3.16bioc/meat/matter.Rcheck/00check.log’ for details.
matter.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs3.16bioc/R/bin/R CMD INSTALL matter ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs3.16bioc/R/sitelibrary’ * installing *source* package ‘matter’ ... ** using staged installation ** libs g++ std=gnu++14 I"/home/biocbuild/bbs3.16bioc/R/include" DNDEBUG I/usr/local/include fpic g O2 Wall c altrep.cpp o altrep.o In file included from matter.h:5, from altrep.cpp:3: atoms.h: In member function ‘AtomInfo Atoms::find_atom(index_t, int)’: atoms.h:191:22: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘long unsigned int’ [Wsigncompare] 191  if ( j <= i && i < j + len ) {  ~~^~~~~~~~~ atoms.h: In member function ‘SEXPREC* Atoms::regroup_index(size_t)’: atoms.h:644:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 644  for ( index_t i = 0; i < ngroups; i++ )  ~~^~~~~~~~~ atoms.h:654:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 654  for ( index_t i = 0; i < ngroups; i++ )  ~~^~~~~~~~~ In file included from altrep.cpp:3: matter.h: In member function ‘void MatterArray::set_region(index_t, size_t, SEXP)’: matter.h:178:14: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] 178  if ( size > XLENGTH(value) && stride != 0 ) {  ~~~~~^~~~~~~~~~~~~~~~ matter.h: In member function ‘SEXPREC* MatterList::get_elements(SEXP, SEXP)’: matter.h:634:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] 634  for ( size_t k = 0; k < len; k++ )  ~~^~~~~ matter.h: In member function ‘void MatterList::set_elements(SEXP, SEXP, SEXP)’: matter.h:658:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] 658  for ( size_t k = 0; k < len; k++ )  ~~^~~~~ matter.h: In member function ‘SEXPREC* MatterStringList::get_strings(SEXP, SEXP)’: matter.h:730:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] 730  for ( size_t k = 0; k < len; k++ )  ~~^~~~~ matter.h: In member function ‘void MatterStringList::set_strings(SEXP, SEXP, SEXP)’: matter.h:754:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] 754  for ( size_t k = 0; k < len; k++ )  ~~^~~~~ In file included from atoms.h:9, from matter.h:5, from altrep.cpp:3: drle.h: In instantiation of ‘CompressedVector<T>::CompressedVector(SEXP) [with T = int; SEXP = SEXPREC*]’: drle.h:422:53: required from here drle.h:209:29: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] 209  for ( size_t i = 0; i < _truelength; i++ )  ~~^~~~~~~~~~~~~ drle.h:213:29: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] 213  for ( size_t i = 0; i < _truelength; i++ )  ~~^~~~~~~~~~~~~ drle.h: In instantiation of ‘CompressedVector<T>::CompressedVector(SEXP) [with T = double; SEXP = SEXPREC*]’: drle.h:583:32: required from here drle.h:209:29: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] 209  for ( size_t i = 0; i < _truelength; i++ )  ~~^~~~~~~~~~~~~ drle.h:213:29: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] 213  for ( size_t i = 0; i < _truelength; i++ )  ~~^~~~~~~~~~~~~ In file included from altrep.cpp:3: matter.h: In instantiation of ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’: matter.h:153:32: required from here matter.h:73:19: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 73  size = len  i > size ? size : len  i;  ~~~~~~~~^~~~~~ matter.h: In instantiation of ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = int; size_t = long unsigned int; index_t = long int]’: matter.h:157:36: required from here matter.h:73:19: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] matter.h: In instantiation of ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = double; size_t = long unsigned int; index_t = long int]’: matter.h:165:33: required from here matter.h:73:19: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] matter.h: In instantiation of ‘size_t MatterArray::set_region(index_t, size_t, T*, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’: matter.h:184:44: required from here matter.h:96:19: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 96  size = len  i > size ? size : len  i;  ~~~~~~~~^~~~~~ matter.h: In instantiation of ‘size_t MatterArray::set_region(index_t, size_t, T*, int) [with T = int; size_t = long unsigned int; index_t = long int]’: matter.h:187:48: required from here matter.h:96:19: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] matter.h: In instantiation of ‘size_t MatterArray::set_region(index_t, size_t, T*, int) [with T = double; size_t = long unsigned int; index_t = long int]’: matter.h:193:45: required from here matter.h:96:19: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] matter.h: In instantiation of ‘size_t MatterMatrix::get_submatrix(SEXP, SEXP, T*, int) [with T = unsigned char; size_t = long unsigned int; SEXP = SEXPREC*]’: matter.h:399:32: required from here matter.h:293:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 293  for ( size_t k = 0; k < nr; k++ )  ~~^~~~ matter.h:310:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 310  for ( size_t k = 0; k < nc; k++ )  ~~^~~~ matter.h: In instantiation of ‘size_t MatterMatrix::get_submatrix(SEXP, SEXP, T*, int) [with T = int; size_t = long unsigned int; SEXP = SEXPREC*]’: matter.h:403:36: required from here matter.h:293:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 293  for ( size_t k = 0; k < nr; k++ )  ~~^~~~ matter.h:310:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 310  for ( size_t k = 0; k < nc; k++ )  ~~^~~~ matter.h: In instantiation of ‘size_t MatterMatrix::get_submatrix(SEXP, SEXP, T*, int) [with T = double; size_t = long unsigned int; SEXP = SEXPREC*]’: matter.h:411:33: required from here matter.h:293:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 293  for ( size_t k = 0; k < nr; k++ )  ~~^~~~ matter.h:310:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 310  for ( size_t k = 0; k < nc; k++ )  ~~^~~~ matter.h: In instantiation of ‘size_t MatterMatrix::set_submatrix(SEXP, SEXP, T*, int) [with T = unsigned char; size_t = long unsigned int; SEXP = SEXPREC*]’: matter.h:436:44: required from here matter.h:348:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 348  for ( size_t k = 0; k < nr; k++ )  ~~^~~~ matter.h:367:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 367  for ( size_t k = 0; k < nc; k++ )  ~~^~~~ matter.h: In instantiation of ‘size_t MatterMatrix::set_submatrix(SEXP, SEXP, T*, int) [with T = int; size_t = long unsigned int; SEXP = SEXPREC*]’: matter.h:439:48: required from here matter.h:348:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 348  for ( size_t k = 0; k < nr; k++ )  ~~^~~~ matter.h:367:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 367  for ( size_t k = 0; k < nc; k++ )  ~~^~~~ matter.h: In instantiation of ‘size_t MatterMatrix::set_submatrix(SEXP, SEXP, T*, int) [with T = double; size_t = long unsigned int; SEXP = SEXPREC*]’: matter.h:445:45: required from here matter.h:348:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 348  for ( size_t k = 0; k < nr; k++ )  ~~^~~~ matter.h:367:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 367  for ( size_t k = 0; k < nc; k++ )  ~~^~~~ In file included from atoms.h:9, from matter.h:5, from altrep.cpp:3: drle.h: In instantiation of ‘size_t recode_drle(CompressedVector<T>, SEXP, Tval*, Tval*, Tlen*, size_t) [with Tval = int; Tlen = int; size_t = long unsigned int; SEXP = SEXPREC*]’: drle.h:557:22: required from ‘SEXPREC* recode_drle(CompressedVector<T>, SEXP) [with T = int; SEXP = SEXPREC*]’ drle.h:580:30: required from here drle.h:533:12: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] 533  while ( i < XLENGTH(indx) && j < nruns )  ~~^~~~~~~~~~~~~~~ drle.h: In instantiation of ‘size_t recode_drle(CompressedVector<T>, SEXP, Tval*, Tval*, Tlen*, size_t) [with Tval = int; Tlen = double; size_t = long unsigned int; SEXP = SEXPREC*]’: drle.h:561:25: required from ‘SEXPREC* recode_drle(CompressedVector<T>, SEXP) [with T = int; SEXP = SEXPREC*]’ drle.h:580:30: required from here drle.h:533:12: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] drle.h: In instantiation of ‘size_t recode_drle(CompressedVector<T>, SEXP, Tval*, Tval*, Tlen*, size_t) [with Tval = double; Tlen = int; size_t = long unsigned int; SEXP = SEXPREC*]’: drle.h:557:22: required from ‘SEXPREC* recode_drle(CompressedVector<T>, SEXP) [with T = double; SEXP = SEXPREC*]’ drle.h:584:30: required from here drle.h:533:12: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] drle.h: In instantiation of ‘size_t recode_drle(CompressedVector<T>, SEXP, Tval*, Tval*, Tlen*, size_t) [with Tval = double; Tlen = double; size_t = long unsigned int; SEXP = SEXPREC*]’: drle.h:561:25: required from ‘SEXPREC* recode_drle(CompressedVector<T>, SEXP) [with T = double; SEXP = SEXPREC*]’ drle.h:584:30: required from here drle.h:533:12: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] drle.h: In instantiation of ‘size_t CompressedVector<T>::getElements(SEXP, T*) [with T = int; size_t = long unsigned int; SEXP = SEXPREC*]’: drle.h:369:4: required from ‘SEXPREC* CompressedVector<T>::getElements(SEXP) [with T = int; SEXP = SEXPREC*]’ drle.h:599:29: required from here drle.h:352:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] 352  for ( j = 0; j < ni; j++ )  ~~^~~~ drle.h: In instantiation of ‘size_t CompressedVector<T>::getElements(SEXP, T*) [with T = double; size_t = long unsigned int; SEXP = SEXPREC*]’: drle.h:369:4: required from ‘SEXPREC* CompressedVector<T>::getElements(SEXP) [with T = double; SEXP = SEXPREC*]’ drle.h:603:29: required from here drle.h:352:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] In file included from matter.h:6, from altrep.cpp:3: ops.h: In instantiation of ‘size_t DeferredOps::apply(T*, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’: matter.h:83:5: required from ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:153:32: required from here ops.h:187:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 187  for ( index_t j = 0; j < size; j++ )  ~~^~~~~~ ops.h: In instantiation of ‘size_t DeferredOps::apply(T*, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’: matter.h:83:5: required from ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:157:36: required from here ops.h:187:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] ops.h: In instantiation of ‘size_t DeferredOps::apply(T*, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’: matter.h:83:5: required from ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:165:33: required from here ops.h:187:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] In file included from altrep.cpp:2: matterDefines.h: In instantiation of ‘size_t ArrayInterface::transpose_index(T*, SEXP, bool) [with T = long int; size_t = long unsigned int; SEXP = SEXPREC*]’: matter.h:116:5: required from ‘size_t MatterArray::get_elements(SEXP, T*, int) [with T = unsigned char; size_t = long unsigned int; SEXP = SEXPREC*]’ matter.h:209:31: required from here matterDefines.h:320:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] 320  for ( size_t j = 0; j < XLENGTH(indx); j++ )  ~~^~~~~~~~~~~~~~~ In file included from matter.h:5, from altrep.cpp:3: atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = char; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’: atoms.h:318:59: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:477:52: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’: atoms.h:320:68: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:477:52: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’: atoms.h:322:62: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:477:52: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short unsigned int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’: atoms.h:324:63: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:477:52: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’: atoms.h:326:62: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:477:52: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’: atoms.h:328:63: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:477:52: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’: atoms.h:330:62: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:477:52: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long unsigned int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’: atoms.h:332:63: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:477:52: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = float; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’: atoms.h:334:60: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:477:52: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = double; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’: atoms.h:336:61: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:477:52: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = char; Tout = int; size_t = long unsigned int; index_t = long int]’: atoms.h:318:59: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:481:54: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = int; size_t = long unsigned int; index_t = long int]’: atoms.h:320:68: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:481:54: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short int; Tout = int; size_t = long unsigned int; index_t = long int]’: atoms.h:322:62: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:481:54: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short unsigned int; Tout = int; size_t = long unsigned int; index_t = long int]’: atoms.h:324:63: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:481:54: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = int; Tout = int; size_t = long unsigned int; index_t = long int]’: atoms.h:326:62: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:481:54: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned int; Tout = int; size_t = long unsigned int; index_t = long int]’: atoms.h:328:63: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:481:54: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long int; Tout = int; size_t = long unsigned int; index_t = long int]’: atoms.h:330:62: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:481:54: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long unsigned int; Tout = int; size_t = long unsigned int; index_t = long int]’: atoms.h:332:63: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:481:54: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = float; Tout = int; size_t = long unsigned int; index_t = long int]’: atoms.h:334:60: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:481:54: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = double; Tout = int; size_t = long unsigned int; index_t = long int]’: atoms.h:336:61: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:481:54: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = char; Tout = double; size_t = long unsigned int; index_t = long int]’: atoms.h:318:59: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:489:54: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = double; size_t = long unsigned int; index_t = long int]’: atoms.h:320:68: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:489:54: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short int; Tout = double; size_t = long unsigned int; index_t = long int]’: atoms.h:322:62: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:489:54: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short unsigned int; Tout = double; size_t = long unsigned int; index_t = long int]’: atoms.h:324:63: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:489:54: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = int; Tout = double; size_t = long unsigned int; index_t = long int]’: atoms.h:326:62: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:489:54: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned int; Tout = double; size_t = long unsigned int; index_t = long int]’: atoms.h:328:63: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:489:54: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long int; Tout = double; size_t = long unsigned int; index_t = long int]’: atoms.h:330:62: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:489:54: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long unsigned int; Tout = double; size_t = long unsigned int; index_t = long int]’: atoms.h:332:63: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:489:54: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = float; Tout = double; size_t = long unsigned int; index_t = long int]’: atoms.h:334:60: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:489:54: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = double; Tout = double; size_t = long unsigned int; index_t = long int]’: atoms.h:336:61: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:489:54: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = char; Tout = char; size_t = long unsigned int; index_t = long int]’: atoms.h:318:59: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’ matter.h:493:46: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = char; size_t = long unsigned int; index_t = long int]’: atoms.h:320:68: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’ matter.h:493:46: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short int; Tout = char; size_t = long unsigned int; index_t = long int]’: atoms.h:322:62: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’ matter.h:493:46: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short unsigned int; Tout = char; size_t = long unsigned int; index_t = long int]’: atoms.h:324:63: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’ matter.h:493:46: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = int; Tout = char; size_t = long unsigned int; index_t = long int]’: atoms.h:326:62: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’ matter.h:493:46: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned int; Tout = char; size_t = long unsigned int; index_t = long int]’: atoms.h:328:63: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’ matter.h:493:46: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long int; Tout = char; size_t = long unsigned int; index_t = long int]’: atoms.h:330:62: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’ matter.h:493:46: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long unsigned int; Tout = char; size_t = long unsigned int; index_t = long int]’: atoms.h:332:63: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’ matter.h:493:46: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = float; Tout = char; size_t = long unsigned int; index_t = long int]’: atoms.h:334:60: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’ matter.h:493:46: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = double; Tout = char; size_t = long unsigned int; index_t = long int]’: atoms.h:336:61: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’ matter.h:493:46: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = char; size_t = long unsigned int; index_t = long int]’: atoms.h:347:60: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:520:64: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’: atoms.h:349:69: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:520:64: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = short int; size_t = long unsigned int; index_t = long int]’: atoms.h:351:63: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:520:64: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = short unsigned int; size_t = long unsigned int; index_t = long int]’: atoms.h:353:64: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:520:64: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = int; size_t = long unsigned int; index_t = long int]’: atoms.h:355:63: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:520:64: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = unsigned int; size_t = long unsigned int; index_t = long int]’: atoms.h:357:64: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:520:64: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = long int; size_t = long unsigned int; index_t = long int]’: atoms.h:359:63: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:520:64: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = long unsigned int; size_t = long unsigned int; index_t = long int]’: atoms.h:361:64: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:520:64: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = float; size_t = long unsigned int; index_t = long int]’: atoms.h:363:61: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:520:64: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = double; size_t = long unsigned int; index_t = long int]’: atoms.h:365:62: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:520:64: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = char; size_t = long unsigned int; index_t = long int]’: atoms.h:347:60: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:523:66: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’: atoms.h:349:69: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:523:66: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = short int; size_t = long unsigned int; index_t = long int]’: atoms.h:351:63: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:523:66: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = short unsigned int; size_t = long unsigned int; index_t = long int]’: atoms.h:353:64: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:523:66: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = int; size_t = long unsigned int; index_t = long int]’: atoms.h:355:63: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:523:66: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = unsigned int; size_t = long unsigned int; index_t = long int]’: atoms.h:357:64: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:523:66: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = long int; size_t = long unsigned int; index_t = long int]’: atoms.h:359:63: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:523:66: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = long unsigned int; size_t = long unsigned int; index_t = long int]’: atoms.h:361:64: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:523:66: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = float; size_t = long unsigned int; index_t = long int]’: atoms.h:363:61: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:523:66: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = double; size_t = long unsigned int; index_t = long int]’: atoms.h:365:62: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:523:66: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = char; size_t = long unsigned int; index_t = long int]’: atoms.h:347:60: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:529:66: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’: atoms.h:349:69: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:529:66: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = short int; size_t = long unsigned int; index_t = long int]’: atoms.h:351:63: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:529:66: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = short unsigned int; size_t = long unsigned int; index_t = long int]’: atoms.h:353:64: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:529:66: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = int; size_t = long unsigned int; index_t = long int]’: atoms.h:355:63: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:529:66: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = unsigned int; size_t = long unsigned int; index_t = long int]’: atoms.h:357:64: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:529:66: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = long int; size_t = long unsigned int; index_t = long int]’: atoms.h:359:63: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:529:66: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = long unsigned int; size_t = long unsigned int; index_t = long int]’: atoms.h:361:64: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:529:66: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = float; size_t = long unsigned int; index_t = long int]’: atoms.h:363:61: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:529:66: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = double; size_t = long unsigned int; index_t = long int]’: atoms.h:365:62: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:529:66: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = char; size_t = long unsigned int; index_t = long int]’: atoms.h:347:60: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ matter.h:536:52: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’: atoms.h:349:69: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ matter.h:536:52: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = short int; size_t = long unsigned int; index_t = long int]’: atoms.h:351:63: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ matter.h:536:52: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = short unsigned int; size_t = long unsigned int; index_t = long int]’: atoms.h:353:64: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ matter.h:536:52: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = int; size_t = long unsigned int; index_t = long int]’: atoms.h:355:63: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ matter.h:536:52: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = unsigned int; size_t = long unsigned int; index_t = long int]’: atoms.h:357:64: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ matter.h:536:52: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = long int; size_t = long unsigned int; index_t = long int]’: atoms.h:359:63: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ matter.h:536:52: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = long unsigned int; size_t = long unsigned int; index_t = long int]’: atoms.h:361:64: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ matter.h:536:52: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = float; size_t = long unsigned int; index_t = long int]’: atoms.h:363:61: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ matter.h:536:52: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = double; size_t = long unsigned int; index_t = long int]’: atoms.h:365:62: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ matter.h:536:52: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ g++ std=gnu++14 I"/home/biocbuild/bbs3.16bioc/R/include" DNDEBUG I/usr/local/include fpic g O2 Wall c init.cpp o init.o In file included from matterExports.h:6, from init.cpp:3: atoms.h: In member function ‘AtomInfo Atoms::find_atom(index_t, int)’: atoms.h:191:22: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘long unsigned int’ [Wsigncompare] 191  if ( j <= i && i < j + len ) {  ~~^~~~~~~~~ atoms.h: In member function ‘SEXPREC* Atoms::regroup_index(size_t)’: atoms.h:644:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 644  for ( index_t i = 0; i < ngroups; i++ )  ~~^~~~~~~~~ atoms.h:654:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 654  for ( index_t i = 0; i < ngroups; i++ )  ~~^~~~~~~~~ In file included from matterExports.h:7, from init.cpp:3: matter.h: In member function ‘void MatterArray::set_region(index_t, size_t, SEXP)’: matter.h:178:14: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] 178  if ( size > XLENGTH(value) && stride != 0 ) {  ~~~~~^~~~~~~~~~~~~~~~ matter.h: In member function ‘SEXPREC* MatterList::get_elements(SEXP, SEXP)’: matter.h:634:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] 634  for ( size_t k = 0; k < len; k++ )  ~~^~~~~ matter.h: In member function ‘void MatterList::set_elements(SEXP, SEXP, SEXP)’: matter.h:658:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] 658  for ( size_t k = 0; k < len; k++ )  ~~^~~~~ matter.h: In member function ‘SEXPREC* MatterStringList::get_strings(SEXP, SEXP)’: matter.h:730:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] 730  for ( size_t k = 0; k < len; k++ )  ~~^~~~~ matter.h: In member function ‘void MatterStringList::set_strings(SEXP, SEXP, SEXP)’: matter.h:754:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] 754  for ( size_t k = 0; k < len; k++ )  ~~^~~~~ In file included from matterExports.h:5, from init.cpp:3: drle.h: In instantiation of ‘CompressedVector<T>::CompressedVector(SEXP) [with T = int; SEXP = SEXPREC*]’: drle.h:422:53: required from here drle.h:209:29: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] 209  for ( size_t i = 0; i < _truelength; i++ )  ~~^~~~~~~~~~~~~ drle.h:213:29: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] 213  for ( size_t i = 0; i < _truelength; i++ )  ~~^~~~~~~~~~~~~ drle.h: In instantiation of ‘CompressedVector<T>::CompressedVector(SEXP) [with T = double; SEXP = SEXPREC*]’: drle.h:583:32: required from here drle.h:209:29: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] 209  for ( size_t i = 0; i < _truelength; i++ )  ~~^~~~~~~~~~~~~ drle.h:213:29: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] 213  for ( size_t i = 0; i < _truelength; i++ )  ~~^~~~~~~~~~~~~ In file included from matterExports.h:7, from init.cpp:3: matter.h: In instantiation of ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’: matter.h:153:32: required from here matter.h:73:19: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 73  size = len  i > size ? size : len  i;  ~~~~~~~~^~~~~~ matter.h: In instantiation of ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = int; size_t = long unsigned int; index_t = long int]’: matter.h:157:36: required from here matter.h:73:19: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] matter.h: In instantiation of ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = double; size_t = long unsigned int; index_t = long int]’: matter.h:165:33: required from here matter.h:73:19: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] matter.h: In instantiation of ‘size_t MatterArray::set_region(index_t, size_t, T*, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’: matter.h:184:44: required from here matter.h:96:19: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 96  size = len  i > size ? size : len  i;  ~~~~~~~~^~~~~~ matter.h: In instantiation of ‘size_t MatterArray::set_region(index_t, size_t, T*, int) [with T = int; size_t = long unsigned int; index_t = long int]’: matter.h:187:48: required from here matter.h:96:19: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] matter.h: In instantiation of ‘size_t MatterArray::set_region(index_t, size_t, T*, int) [with T = double; size_t = long unsigned int; index_t = long int]’: matter.h:193:45: required from here matter.h:96:19: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] matter.h: In instantiation of ‘size_t MatterMatrix::get_submatrix(SEXP, SEXP, T*, int) [with T = unsigned char; size_t = long unsigned int; SEXP = SEXPREC*]’: matter.h:399:32: required from here matter.h:293:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 293  for ( size_t k = 0; k < nr; k++ )  ~~^~~~ matter.h:310:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 310  for ( size_t k = 0; k < nc; k++ )  ~~^~~~ matter.h: In instantiation of ‘size_t MatterMatrix::get_submatrix(SEXP, SEXP, T*, int) [with T = int; size_t = long unsigned int; SEXP = SEXPREC*]’: matter.h:403:36: required from here matter.h:293:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 293  for ( size_t k = 0; k < nr; k++ )  ~~^~~~ matter.h:310:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 310  for ( size_t k = 0; k < nc; k++ )  ~~^~~~ matter.h: In instantiation of ‘size_t MatterMatrix::get_submatrix(SEXP, SEXP, T*, int) [with T = double; size_t = long unsigned int; SEXP = SEXPREC*]’: matter.h:411:33: required from here matter.h:293:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 293  for ( size_t k = 0; k < nr; k++ )  ~~^~~~ matter.h:310:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 310  for ( size_t k = 0; k < nc; k++ )  ~~^~~~ matter.h: In instantiation of ‘size_t MatterMatrix::set_submatrix(SEXP, SEXP, T*, int) [with T = unsigned char; size_t = long unsigned int; SEXP = SEXPREC*]’: matter.h:436:44: required from here matter.h:348:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 348  for ( size_t k = 0; k < nr; k++ )  ~~^~~~ matter.h:367:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 367  for ( size_t k = 0; k < nc; k++ )  ~~^~~~ matter.h: In instantiation of ‘size_t MatterMatrix::set_submatrix(SEXP, SEXP, T*, int) [with T = int; size_t = long unsigned int; SEXP = SEXPREC*]’: matter.h:439:48: required from here matter.h:348:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 348  for ( size_t k = 0; k < nr; k++ )  ~~^~~~ matter.h:367:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 367  for ( size_t k = 0; k < nc; k++ )  ~~^~~~ matter.h: In instantiation of ‘size_t MatterMatrix::set_submatrix(SEXP, SEXP, T*, int) [with T = double; size_t = long unsigned int; SEXP = SEXPREC*]’: matter.h:445:45: required from here matter.h:348:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 348  for ( size_t k = 0; k < nr; k++ )  ~~^~~~ matter.h:367:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 367  for ( size_t k = 0; k < nc; k++ )  ~~^~~~ In file included from matterExports.h:9, from init.cpp:3: sparse.h: In instantiation of ‘size_t SparseMatrix::get_submatrix(SEXP, SEXP, Tval*, int) [with Tind = int; Tval = int; size_t = long unsigned int; SEXP = SEXPREC*]’: sparse.h:575:47: required from here sparse.h:528:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 528  for ( size_t k = 0; k < nr; k++ )  ~~^~~~ sparse.h:545:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 545  for ( size_t k = 0; k < nc; k++ )  ~~^~~~ sparse.h: In instantiation of ‘size_t SparseMatrix::get_submatrix(SEXP, SEXP, Tval*, int) [with Tind = double; Tval = int; size_t = long unsigned int; SEXP = SEXPREC*]’: sparse.h:578:50: required from here sparse.h:528:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 528  for ( size_t k = 0; k < nr; k++ )  ~~^~~~ sparse.h:545:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 545  for ( size_t k = 0; k < nc; k++ )  ~~^~~~ sparse.h: In instantiation of ‘size_t SparseMatrix::get_submatrix(SEXP, SEXP, Tval*, int) [with Tind = int; Tval = double; size_t = long unsigned int; SEXP = SEXPREC*]’: sparse.h:588:47: required from here sparse.h:528:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 528  for ( size_t k = 0; k < nr; k++ )  ~~^~~~ sparse.h:545:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 545  for ( size_t k = 0; k < nc; k++ )  ~~^~~~ sparse.h: In instantiation of ‘size_t SparseMatrix::get_submatrix(SEXP, SEXP, Tval*, int) [with Tind = double; Tval = double; size_t = long unsigned int; SEXP = SEXPREC*]’: sparse.h:591:50: required from here sparse.h:528:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 528  for ( size_t k = 0; k < nr; k++ )  ~~^~~~ sparse.h:545:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 545  for ( size_t k = 0; k < nc; k++ )  ~~^~~~ In file included from matterExports.h:5, from init.cpp:3: drle.h: In instantiation of ‘size_t recode_drle(CompressedVector<T>, SEXP, Tval*, Tval*, Tlen*, size_t) [with Tval = int; Tlen = int; size_t = long unsigned int; SEXP = SEXPREC*]’: drle.h:557:22: required from ‘SEXPREC* recode_drle(CompressedVector<T>, SEXP) [with T = int; SEXP = SEXPREC*]’ drle.h:580:30: required from here drle.h:533:12: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] 533  while ( i < XLENGTH(indx) && j < nruns )  ~~^~~~~~~~~~~~~~~ drle.h: In instantiation of ‘size_t recode_drle(CompressedVector<T>, SEXP, Tval*, Tval*, Tlen*, size_t) [with Tval = int; Tlen = double; size_t = long unsigned int; SEXP = SEXPREC*]’: drle.h:561:25: required from ‘SEXPREC* recode_drle(CompressedVector<T>, SEXP) [with T = int; SEXP = SEXPREC*]’ drle.h:580:30: required from here drle.h:533:12: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] drle.h: In instantiation of ‘size_t recode_drle(CompressedVector<T>, SEXP, Tval*, Tval*, Tlen*, size_t) [with Tval = double; Tlen = int; size_t = long unsigned int; SEXP = SEXPREC*]’: drle.h:557:22: required from ‘SEXPREC* recode_drle(CompressedVector<T>, SEXP) [with T = double; SEXP = SEXPREC*]’ drle.h:584:30: required from here drle.h:533:12: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] drle.h: In instantiation of ‘size_t recode_drle(CompressedVector<T>, SEXP, Tval*, Tval*, Tlen*, size_t) [with Tval = double; Tlen = double; size_t = long unsigned int; SEXP = SEXPREC*]’: drle.h:561:25: required from ‘SEXPREC* recode_drle(CompressedVector<T>, SEXP) [with T = double; SEXP = SEXPREC*]’ drle.h:584:30: required from here drle.h:533:12: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] drle.h: In instantiation of ‘size_t CompressedVector<T>::getElements(SEXP, T*) [with T = int; size_t = long unsigned int; SEXP = SEXPREC*]’: drle.h:369:4: required from ‘SEXPREC* CompressedVector<T>::getElements(SEXP) [with T = int; SEXP = SEXPREC*]’ drle.h:599:29: required from here drle.h:352:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] 352  for ( j = 0; j < ni; j++ )  ~~^~~~ drle.h: In instantiation of ‘size_t CompressedVector<T>::getElements(SEXP, T*) [with T = double; size_t = long unsigned int; SEXP = SEXPREC*]’: drle.h:369:4: required from ‘SEXPREC* CompressedVector<T>::getElements(SEXP) [with T = double; SEXP = SEXPREC*]’ drle.h:603:29: required from here drle.h:352:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] In file included from matter.h:6, from matterExports.h:7, from init.cpp:3: ops.h: In instantiation of ‘size_t DeferredOps::apply(T*, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’: matter.h:83:5: required from ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:153:32: required from here ops.h:187:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 187  for ( index_t j = 0; j < size; j++ )  ~~^~~~~~ ops.h: In instantiation of ‘size_t DeferredOps::apply(T*, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’: matter.h:83:5: required from ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:157:36: required from here ops.h:187:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] ops.h: In instantiation of ‘size_t DeferredOps::apply(T*, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’: matter.h:83:5: required from ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:165:33: required from here ops.h:187:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] In file included from drle.h:4, from matterExports.h:5, from init.cpp:3: matterDefines.h: In instantiation of ‘size_t ArrayInterface::transpose_index(T*, SEXP, bool) [with T = long int; size_t = long unsigned int; SEXP = SEXPREC*]’: matter.h:116:5: required from ‘size_t MatterArray::get_elements(SEXP, T*, int) [with T = unsigned char; size_t = long unsigned int; SEXP = SEXPREC*]’ matter.h:209:31: required from here matterDefines.h:320:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] 320  for ( size_t j = 0; j < XLENGTH(indx); j++ )  ~~^~~~~~~~~~~~~~~ In file included from matterExports.h:8, from init.cpp:3: search.h: In instantiation of ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = int; Tval = int; index_t = long int; size_t = long unsigned int]’: search.h:275:25: required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = int; Tval = int; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’ search.h:290:72: required from here search.h:225:32: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 225  for ( index_t i = pos[j]; i < xlen; i++ )  ~~^~~~~~ search.h: In instantiation of ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = double; Tval = int; index_t = long int; size_t = long unsigned int]’: search.h:275:25: required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = double; Tval = int; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’ search.h:294:72: required from here search.h:225:32: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] search.h: In instantiation of ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = int; index_t = long int; size_t = long unsigned int]’: search.h:275:25: required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = int; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’ search.h:298:72: required from here search.h:225:32: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] search.h: In instantiation of ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = int; Tval = double; index_t = long int; size_t = long unsigned int]’: search.h:275:25: required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = int; Tval = double; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’ search.h:308:69: required from here search.h:225:32: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] search.h: In instantiation of ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = double; Tval = double; index_t = long int; size_t = long unsigned int]’: search.h:275:25: required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = double; Tval = double; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’ search.h:312:69: required from here search.h:225:32: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] search.h: In instantiation of ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = double; index_t = long int; size_t = long unsigned int]’: search.h:275:25: required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = double; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’ search.h:316:69: required from here search.h:225:32: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] In file included from matterExports.h:9, from init.cpp:3: sparse.h: In instantiation of ‘size_t SparseArray::get_compressed_region(index_t, index_t, size_t, Tval*, int) [with Tind = int; Tval = int; size_t = long unsigned int; index_t = long int]’: sparse.h:402:9: required from ‘size_t SparseArray::get_region(index_t, size_t, Tval*, int) [with Tind = int; Tval = int; size_t = long unsigned int; index_t = long int]’ sparse.h:433:47: required from here sparse.h:336:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 336  if ( i < 0  i + size > sparse_extent() )  ~~~~~~~~~^~~~~~~~~~~~~~~~~ sparse.h:362:24: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 362  if ( ii < 0  ii >= size )  ~~~^~~~~~~ sparse.h: In instantiation of ‘size_t SparseArray::get_compressed_region(index_t, index_t, size_t, Tval*, int) [with Tind = double; Tval = int; size_t = long unsigned int; index_t = long int]’: sparse.h:402:9: required from ‘size_t SparseArray::get_region(index_t, size_t, Tval*, int) [with Tind = double; Tval = int; size_t = long unsigned int; index_t = long int]’ sparse.h:436:50: required from here sparse.h:336:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 336  if ( i < 0  i + size > sparse_extent() )  ~~~~~~~~~^~~~~~~~~~~~~~~~~ sparse.h:362:24: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 362  if ( ii < 0  ii >= size )  ~~~^~~~~~~ sparse.h: In instantiation of ‘size_t SparseArray::get_compressed_region(index_t, index_t, size_t, Tval*, int) [with Tind = int; Tval = double; size_t = long unsigned int; index_t = long int]’: sparse.h:402:9: required from ‘size_t SparseArray::get_region(index_t, size_t, Tval*, int) [with Tind = int; Tval = double; size_t = long unsigned int; index_t = long int]’ sparse.h:446:47: required from here sparse.h:336:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 336  if ( i < 0  i + size > sparse_extent() )  ~~~~~~~~~^~~~~~~~~~~~~~~~~ sparse.h:362:24: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 362  if ( ii < 0  ii >= size )  ~~~^~~~~~~ sparse.h: In instantiation of ‘size_t SparseArray::get_compressed_region(index_t, index_t, size_t, Tval*, int) [with Tind = double; Tval = double; size_t = long unsigned int; index_t = long int]’: sparse.h:402:9: required from ‘size_t SparseArray::get_region(index_t, size_t, Tval*, int) [with Tind = double; Tval = double; size_t = long unsigned int; index_t = long int]’ sparse.h:449:50: required from here sparse.h:336:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 336  if ( i < 0  i + size > sparse_extent() )  ~~~~~~~~~^~~~~~~~~~~~~~~~~ sparse.h:362:24: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 362  if ( ii < 0  ii >= size )  ~~~^~~~~~~ In file included from matterExports.h:6, from init.cpp:3: atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = char; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’: atoms.h:318:59: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:477:52: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’: atoms.h:320:68: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:477:52: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’: atoms.h:322:62: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:477:52: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short unsigned int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’: atoms.h:324:63: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:477:52: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’: atoms.h:326:62: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:477:52: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’: atoms.h:328:63: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:477:52: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’: atoms.h:330:62: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:477:52: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long unsigned int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’: atoms.h:332:63: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:477:52: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = float; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’: atoms.h:334:60: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:477:52: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = double; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’: atoms.h:336:61: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:477:52: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = char; Tout = int; size_t = long unsigned int; index_t = long int]’: atoms.h:318:59: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:481:54: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = int; size_t = long unsigned int; index_t = long int]’: atoms.h:320:68: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:481:54: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short int; Tout = int; size_t = long unsigned int; index_t = long int]’: atoms.h:322:62: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:481:54: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short unsigned int; Tout = int; size_t = long unsigned int; index_t = long int]’: atoms.h:324:63: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:481:54: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = int; Tout = int; size_t = long unsigned int; index_t = long int]’: atoms.h:326:62: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:481:54: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned int; Tout = int; size_t = long unsigned int; index_t = long int]’: atoms.h:328:63: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:481:54: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long int; Tout = int; size_t = long unsigned int; index_t = long int]’: atoms.h:330:62: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:481:54: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long unsigned int; Tout = int; size_t = long unsigned int; index_t = long int]’: atoms.h:332:63: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:481:54: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = float; Tout = int; size_t = long unsigned int; index_t = long int]’: atoms.h:334:60: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:481:54: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = double; Tout = int; size_t = long unsigned int; index_t = long int]’: atoms.h:336:61: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:481:54: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = char; Tout = double; size_t = long unsigned int; index_t = long int]’: atoms.h:318:59: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:489:54: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = double; size_t = long unsigned int; index_t = long int]’: atoms.h:320:68: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:489:54: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short int; Tout = double; size_t = long unsigned int; index_t = long int]’: atoms.h:322:62: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:489:54: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short unsigned int; Tout = double; size_t = long unsigned int; index_t = long int]’: atoms.h:324:63: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:489:54: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = int; Tout = double; size_t = long unsigned int; index_t = long int]’: atoms.h:326:62: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:489:54: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned int; Tout = double; size_t = long unsigned int; index_t = long int]’: atoms.h:328:63: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:489:54: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long int; Tout = double; size_t = long unsigned int; index_t = long int]’: atoms.h:330:62: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:489:54: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long unsigned int; Tout = double; size_t = long unsigned int; index_t = long int]’: atoms.h:332:63: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:489:54: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = float; Tout = double; size_t = long unsigned int; index_t = long int]’: atoms.h:334:60: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:489:54: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = double; Tout = double; size_t = long unsigned int; index_t = long int]’: atoms.h:336:61: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:489:54: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = char; Tout = char; size_t = long unsigned int; index_t = long int]’: atoms.h:318:59: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’ matter.h:493:46: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = char; size_t = long unsigned int; index_t = long int]’: atoms.h:320:68: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’ matter.h:493:46: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short int; Tout = char; size_t = long unsigned int; index_t = long int]’: atoms.h:322:62: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’ matter.h:493:46: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short unsigned int; Tout = char; size_t = long unsigned int; index_t = long int]’: atoms.h:324:63: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’ matter.h:493:46: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = int; Tout = char; size_t = long unsigned int; index_t = long int]’: atoms.h:326:62: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’ matter.h:493:46: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned int; Tout = char; size_t = long unsigned int; index_t = long int]’: atoms.h:328:63: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’ matter.h:493:46: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long int; Tout = char; size_t = long unsigned int; index_t = long int]’: atoms.h:330:62: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’ matter.h:493:46: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long unsigned int; Tout = char; size_t = long unsigned int; index_t = long int]’: atoms.h:332:63: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’ matter.h:493:46: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = float; Tout = char; size_t = long unsigned int; index_t = long int]’: atoms.h:334:60: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’ matter.h:493:46: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = double; Tout = char; size_t = long unsigned int; index_t = long int]’: atoms.h:336:61: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’ matter.h:493:46: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = char; size_t = long unsigned int; index_t = long int]’: atoms.h:347:60: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:520:64: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’: atoms.h:349:69: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:520:64: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = short int; size_t = long unsigned int; index_t = long int]’: atoms.h:351:63: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:520:64: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = short unsigned int; size_t = long unsigned int; index_t = long int]’: atoms.h:353:64: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:520:64: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = int; size_t = long unsigned int; index_t = long int]’: atoms.h:355:63: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:520:64: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = unsigned int; size_t = long unsigned int; index_t = long int]’: atoms.h:357:64: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:520:64: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = long int; size_t = long unsigned int; index_t = long int]’: atoms.h:359:63: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:520:64: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = long unsigned int; size_t = long unsigned int; index_t = long int]’: atoms.h:361:64: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:520:64: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = float; size_t = long unsigned int; index_t = long int]’: atoms.h:363:61: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:520:64: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = double; size_t = long unsigned int; index_t = long int]’: atoms.h:365:62: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:520:64: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = char; size_t = long unsigned int; index_t = long int]’: atoms.h:347:60: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:523:66: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’: atoms.h:349:69: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:523:66: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = short int; size_t = long unsigned int; index_t = long int]’: atoms.h:351:63: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:523:66: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = short unsigned int; size_t = long unsigned int; index_t = long int]’: atoms.h:353:64: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:523:66: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = int; size_t = long unsigned int; index_t = long int]’: atoms.h:355:63: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:523:66: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = unsigned int; size_t = long unsigned int; index_t = long int]’: atoms.h:357:64: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:523:66: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = long int; size_t = long unsigned int; index_t = long int]’: atoms.h:359:63: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:523:66: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = long unsigned int; size_t = long unsigned int; index_t = long int]’: atoms.h:361:64: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:523:66: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = float; size_t = long unsigned int; index_t = long int]’: atoms.h:363:61: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:523:66: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = double; size_t = long unsigned int; index_t = long int]’: atoms.h:365:62: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:523:66: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = char; size_t = long unsigned int; index_t = long int]’: atoms.h:347:60: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:529:66: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’: atoms.h:349:69: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:529:66: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = short int; size_t = long unsigned int; index_t = long int]’: atoms.h:351:63: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:529:66: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = short unsigned int; size_t = long unsigned int; index_t = long int]’: atoms.h:353:64: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:529:66: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = int; size_t = long unsigned int; index_t = long int]’: atoms.h:355:63: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:529:66: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = unsigned int; size_t = long unsigned int; index_t = long int]’: atoms.h:357:64: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:529:66: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = long int; size_t = long unsigned int; index_t = long int]’: atoms.h:359:63: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:529:66: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = long unsigned int; size_t = long unsigned int; index_t = long int]’: atoms.h:361:64: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:529:66: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = float; size_t = long unsigned int; index_t = long int]’: atoms.h:363:61: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:529:66: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = double; size_t = long unsigned int; index_t = long int]’: atoms.h:365:62: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:529:66: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = char; size_t = long unsigned int; index_t = long int]’: atoms.h:347:60: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ matter.h:536:52: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’: atoms.h:349:69: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ matter.h:536:52: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = short int; size_t = long unsigned int; index_t = long int]’: atoms.h:351:63: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ matter.h:536:52: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = short unsigned int; size_t = long unsigned int; index_t = long int]’: atoms.h:353:64: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ matter.h:536:52: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = int; size_t = long unsigned int; index_t = long int]’: atoms.h:355:63: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ matter.h:536:52: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = unsigned int; size_t = long unsigned int; index_t = long int]’: atoms.h:357:64: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ matter.h:536:52: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = long int; size_t = long unsigned int; index_t = long int]’: atoms.h:359:63: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ matter.h:536:52: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = long unsigned int; size_t = long unsigned int; index_t = long int]’: atoms.h:361:64: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ matter.h:536:52: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = float; size_t = long unsigned int; index_t = long int]’: atoms.h:363:61: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ matter.h:536:52: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = double; size_t = long unsigned int; index_t = long int]’: atoms.h:365:62: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ matter.h:536:52: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ In file included from search.h:5, from matterExports.h:8, from init.cpp:3: signal.h: In instantiation of ‘Ty interp1(Tx, Tx*, Ty*, size_t, size_t, double, int, int, bool) [with Tx = int; Ty = int; size_t = long unsigned int]’: search.h:229:30: required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = int; Tval = int; index_t = long int; size_t = long unsigned int]’ search.h:275:25: required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = int; Tval = int; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’ search.h:290:72: required from here signal.h:97:29: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 97  for ( index_t i = init; i < end && i >= 0; i += k )  ~~^~~~~ signal.h: In instantiation of ‘Ty interp1(Tx, Tx*, Ty*, size_t, size_t, double, int, int, bool) [with Tx = double; Ty = int; size_t = long unsigned int]’: search.h:229:30: required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = double; Tval = int; index_t = long int; size_t = long unsigned int]’ search.h:275:25: required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = double; Tval = int; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’ search.h:294:72: required from here signal.h:97:29: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] signal.h: In instantiation of ‘Ty interp1(Tx, Tx*, Ty*, size_t, size_t, double, int, int, bool) [with Tx = SEXPREC*; Ty = int; size_t = long unsigned int]’: search.h:229:30: required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = int; index_t = long int; size_t = long unsigned int]’ search.h:275:25: required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = int; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’ search.h:298:72: required from here signal.h:97:29: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] signal.h: In instantiation of ‘Ty interp1(Tx, Tx*, Ty*, size_t, size_t, double, int, int, bool) [with Tx = int; Ty = double; size_t = long unsigned int]’: search.h:229:30: required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = int; Tval = double; index_t = long int; size_t = long unsigned int]’ search.h:275:25: required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = int; Tval = double; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’ search.h:308:69: required from here signal.h:97:29: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] signal.h: In instantiation of ‘Ty interp1(Tx, Tx*, Ty*, size_t, size_t, double, int, int, bool) [with Tx = double; Ty = double; size_t = long unsigned int]’: search.h:229:30: required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = double; Tval = double; index_t = long int; size_t = long unsigned int]’ search.h:275:25: required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = double; Tval = double; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’ search.h:312:69: required from here signal.h:97:29: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] signal.h: In instantiation of ‘Ty interp1(Tx, Tx*, Ty*, size_t, size_t, double, int, int, bool) [with Tx = SEXPREC*; Ty = double; size_t = long unsigned int]’: search.h:229:30: required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = double; index_t = long int; size_t = long unsigned int]’ search.h:275:25: required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = double; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’ search.h:316:69: required from here signal.h:97:29: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] In file included from matterExports.h:9, from init.cpp:3: sparse.h: In instantiation of ‘void SparseArray::copy_domain(index_t, size_t, T*) [with T = int; index_t = long int; size_t = long unsigned int]’: sparse.h:349:5: required from ‘size_t SparseArray::get_compressed_region(index_t, index_t, size_t, Tval*, int) [with Tind = int; Tval = int; size_t = long unsigned int; index_t = long int]’ sparse.h:402:9: required from ‘size_t SparseArray::get_region(index_t, size_t, Tval*, int) [with Tind = int; Tval = int; size_t = long unsigned int; index_t = long int]’ sparse.h:433:47: required from here sparse.h:190:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 190  if ( i < 0  i + size > sparse_extent() )  ~~~~~~~~~^~~~~~~~~~~~~~~~~ sparse.h: In instantiation of ‘void SparseArray::copy_domain(index_t, size_t, T*) [with T = double; index_t = long int; size_t = long unsigned int]’: sparse.h:349:5: required from ‘size_t SparseArray::get_compressed_region(index_t, index_t, size_t, Tval*, int) [with Tind = double; Tval = int; size_t = long unsigned int; index_t = long int]’ sparse.h:402:9: required from ‘size_t SparseArray::get_region(index_t, size_t, Tval*, int) [with Tind = double; Tval = int; size_t = long unsigned int; index_t = long int]’ sparse.h:436:50: required from here sparse.h:190:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] In file included from init.cpp:4: altrep.h: At global scope: altrep.h:18:25: warning: ‘matter_altstring’ defined but not used [Wunusedvariable] 18  static R_altrep_class_t matter_altstring;  ^~~~~~~~~~~~~~~~ altrep.h:17:25: warning: ‘matter_altreal’ defined but not used [Wunusedvariable] 17  static R_altrep_class_t matter_altreal;  ^~~~~~~~~~~~~~ altrep.h:16:25: warning: ‘matter_altinteger’ defined but not used [Wunusedvariable] 16  static R_altrep_class_t matter_altinteger;  ^~~~~~~~~~~~~~~~~ altrep.h:15:25: warning: ‘matter_altlogical’ defined but not used [Wunusedvariable] 15  static R_altrep_class_t matter_altlogical;  ^~~~~~~~~~~~~~~~~ altrep.h:14:25: warning: ‘matter_altraw’ defined but not used [Wunusedvariable] 14  static R_altrep_class_t matter_altraw;  ^~~~~~~~~~~~~ g++ std=gnu++14 I"/home/biocbuild/bbs3.16bioc/R/include" DNDEBUG I/usr/local/include fpic g O2 Wall c matterExports.cpp o matterExports.o In file included from matterExports.h:6, from matterExports.cpp:2: atoms.h: In member function ‘AtomInfo Atoms::find_atom(index_t, int)’: atoms.h:191:22: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘long unsigned int’ [Wsigncompare] 191  if ( j <= i && i < j + len ) {  ~~^~~~~~~~~ atoms.h: In member function ‘SEXPREC* Atoms::regroup_index(size_t)’: atoms.h:644:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 644  for ( index_t i = 0; i < ngroups; i++ )  ~~^~~~~~~~~ atoms.h:654:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 654  for ( index_t i = 0; i < ngroups; i++ )  ~~^~~~~~~~~ In file included from matterExports.h:7, from matterExports.cpp:2: matter.h: In member function ‘void MatterArray::set_region(index_t, size_t, SEXP)’: matter.h:178:14: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] 178  if ( size > XLENGTH(value) && stride != 0 ) {  ~~~~~^~~~~~~~~~~~~~~~ matter.h: In member function ‘SEXPREC* MatterList::get_elements(SEXP, SEXP)’: matter.h:634:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] 634  for ( size_t k = 0; k < len; k++ )  ~~^~~~~ matter.h: In member function ‘void MatterList::set_elements(SEXP, SEXP, SEXP)’: matter.h:658:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] 658  for ( size_t k = 0; k < len; k++ )  ~~^~~~~ matter.h: In member function ‘SEXPREC* MatterStringList::get_strings(SEXP, SEXP)’: matter.h:730:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] 730  for ( size_t k = 0; k < len; k++ )  ~~^~~~~ matter.h: In member function ‘void MatterStringList::set_strings(SEXP, SEXP, SEXP)’: matter.h:754:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] 754  for ( size_t k = 0; k < len; k++ )  ~~^~~~~ In file included from matterExports.h:5, from matterExports.cpp:2: drle.h: In instantiation of ‘CompressedVector<T>::CompressedVector(SEXP) [with T = int; SEXP = SEXPREC*]’: drle.h:422:53: required from here drle.h:209:29: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] 209  for ( size_t i = 0; i < _truelength; i++ )  ~~^~~~~~~~~~~~~ drle.h:213:29: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] 213  for ( size_t i = 0; i < _truelength; i++ )  ~~^~~~~~~~~~~~~ drle.h: In instantiation of ‘CompressedVector<T>::CompressedVector(SEXP) [with T = double; SEXP = SEXPREC*]’: drle.h:583:32: required from here drle.h:209:29: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] 209  for ( size_t i = 0; i < _truelength; i++ )  ~~^~~~~~~~~~~~~ drle.h:213:29: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] 213  for ( size_t i = 0; i < _truelength; i++ )  ~~^~~~~~~~~~~~~ In file included from matterExports.h:7, from matterExports.cpp:2: matter.h: In instantiation of ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’: matter.h:153:32: required from here matter.h:73:19: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 73  size = len  i > size ? size : len  i;  ~~~~~~~~^~~~~~ matter.h: In instantiation of ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = int; size_t = long unsigned int; index_t = long int]’: matter.h:157:36: required from here matter.h:73:19: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] matter.h: In instantiation of ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = double; size_t = long unsigned int; index_t = long int]’: matter.h:165:33: required from here matter.h:73:19: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] matter.h: In instantiation of ‘size_t MatterArray::set_region(index_t, size_t, T*, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’: matter.h:184:44: required from here matter.h:96:19: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 96  size = len  i > size ? size : len  i;  ~~~~~~~~^~~~~~ matter.h: In instantiation of ‘size_t MatterArray::set_region(index_t, size_t, T*, int) [with T = int; size_t = long unsigned int; index_t = long int]’: matter.h:187:48: required from here matter.h:96:19: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] matter.h: In instantiation of ‘size_t MatterArray::set_region(index_t, size_t, T*, int) [with T = double; size_t = long unsigned int; index_t = long int]’: matter.h:193:45: required from here matter.h:96:19: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] matter.h: In instantiation of ‘size_t MatterMatrix::get_submatrix(SEXP, SEXP, T*, int) [with T = unsigned char; size_t = long unsigned int; SEXP = SEXPREC*]’: matter.h:399:32: required from here matter.h:293:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 293  for ( size_t k = 0; k < nr; k++ )  ~~^~~~ matter.h:310:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 310  for ( size_t k = 0; k < nc; k++ )  ~~^~~~ matter.h: In instantiation of ‘size_t MatterMatrix::get_submatrix(SEXP, SEXP, T*, int) [with T = int; size_t = long unsigned int; SEXP = SEXPREC*]’: matter.h:403:36: required from here matter.h:293:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 293  for ( size_t k = 0; k < nr; k++ )  ~~^~~~ matter.h:310:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 310  for ( size_t k = 0; k < nc; k++ )  ~~^~~~ matter.h: In instantiation of ‘size_t MatterMatrix::get_submatrix(SEXP, SEXP, T*, int) [with T = double; size_t = long unsigned int; SEXP = SEXPREC*]’: matter.h:411:33: required from here matter.h:293:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 293  for ( size_t k = 0; k < nr; k++ )  ~~^~~~ matter.h:310:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 310  for ( size_t k = 0; k < nc; k++ )  ~~^~~~ matter.h: In instantiation of ‘size_t MatterMatrix::set_submatrix(SEXP, SEXP, T*, int) [with T = unsigned char; size_t = long unsigned int; SEXP = SEXPREC*]’: matter.h:436:44: required from here matter.h:348:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 348  for ( size_t k = 0; k < nr; k++ )  ~~^~~~ matter.h:367:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 367  for ( size_t k = 0; k < nc; k++ )  ~~^~~~ matter.h: In instantiation of ‘size_t MatterMatrix::set_submatrix(SEXP, SEXP, T*, int) [with T = int; size_t = long unsigned int; SEXP = SEXPREC*]’: matter.h:439:48: required from here matter.h:348:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 348  for ( size_t k = 0; k < nr; k++ )  ~~^~~~ matter.h:367:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 367  for ( size_t k = 0; k < nc; k++ )  ~~^~~~ matter.h: In instantiation of ‘size_t MatterMatrix::set_submatrix(SEXP, SEXP, T*, int) [with T = double; size_t = long unsigned int; SEXP = SEXPREC*]’: matter.h:445:45: required from here matter.h:348:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 348  for ( size_t k = 0; k < nr; k++ )  ~~^~~~ matter.h:367:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 367  for ( size_t k = 0; k < nc; k++ )  ~~^~~~ In file included from matterExports.h:9, from matterExports.cpp:2: sparse.h: In instantiation of ‘size_t SparseMatrix::get_submatrix(SEXP, SEXP, Tval*, int) [with Tind = int; Tval = int; size_t = long unsigned int; SEXP = SEXPREC*]’: sparse.h:575:47: required from here sparse.h:528:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 528  for ( size_t k = 0; k < nr; k++ )  ~~^~~~ sparse.h:545:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 545  for ( size_t k = 0; k < nc; k++ )  ~~^~~~ sparse.h: In instantiation of ‘size_t SparseMatrix::get_submatrix(SEXP, SEXP, Tval*, int) [with Tind = double; Tval = int; size_t = long unsigned int; SEXP = SEXPREC*]’: sparse.h:578:50: required from here sparse.h:528:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 528  for ( size_t k = 0; k < nr; k++ )  ~~^~~~ sparse.h:545:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 545  for ( size_t k = 0; k < nc; k++ )  ~~^~~~ sparse.h: In instantiation of ‘size_t SparseMatrix::get_submatrix(SEXP, SEXP, Tval*, int) [with Tind = int; Tval = double; size_t = long unsigned int; SEXP = SEXPREC*]’: sparse.h:588:47: required from here sparse.h:528:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 528  for ( size_t k = 0; k < nr; k++ )  ~~^~~~ sparse.h:545:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 545  for ( size_t k = 0; k < nc; k++ )  ~~^~~~ sparse.h: In instantiation of ‘size_t SparseMatrix::get_submatrix(SEXP, SEXP, Tval*, int) [with Tind = double; Tval = double; size_t = long unsigned int; SEXP = SEXPREC*]’: sparse.h:591:50: required from here sparse.h:528:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 528  for ( size_t k = 0; k < nr; k++ )  ~~^~~~ sparse.h:545:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 545  for ( size_t k = 0; k < nc; k++ )  ~~^~~~ In file included from matterExports.h:6, from matterExports.cpp:2: atoms.h: In instantiation of ‘SEXPREC* Atoms::subset_index(T*, size_t, bool) [with T = int; SEXP = SEXPREC*; size_t = long unsigned int]’: matterExports.cpp:172:57: required from here atoms.h:552:15: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 552  while ( i < size )  ~~^~~~~~ atoms.h:572:15: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 572  while ( i < size )  ~~^~~~~~ atoms.h: In instantiation of ‘SEXPREC* Atoms::subset_index(T*, size_t, bool) [with T = double; SEXP = SEXPREC*; size_t = long unsigned int]’: matterExports.cpp:174:57: required from here atoms.h:552:15: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 552  while ( i < size )  ~~^~~~~~ atoms.h:572:15: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 572  while ( i < size )  ~~^~~~~~ In file included from search.h:5, from matterExports.h:8, from matterExports.cpp:2: signal.h: In instantiation of ‘void bin_vector(T*, int, int*, int*, double*, int, int) [with T = int]’: matterExports.cpp:288:49: required from here signal.h:239:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 239  for ( size_t i = 0; i < nbin; i++ ) {  ~~^~~~~~ signal.h:245:36: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 245  for ( size_t j = lower[i]  1; j < upper[i] && j < n; j++ ) signal.h:245:52: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 245  for ( size_t j = lower[i]  1; j < upper[i] && j < n; j++ )  ~~^~~ signal.h: In instantiation of ‘void bin_vector(T*, int, int*, int*, double*, int, int) [with T = double]’: matterExports.cpp:292:49: required from here signal.h:239:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 239  for ( size_t i = 0; i < nbin; i++ ) {  ~~^~~~~~ signal.h:245:36: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 245  for ( size_t j = lower[i]  1; j < upper[i] && j < n; j++ ) signal.h:245:52: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [Wsigncompare] 245  for ( size_t j = lower[i]  1; j < upper[i] && j < n; j++ )  ~~^~~ signal.h: In instantiation of ‘size_t local_maxima(T*, size_t, int, int*) [with T = int; size_t = long unsigned int]’: matterExports.cpp:308:38: required from here signal.h:272:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 272  for ( int i = 0; i < n; i++ )  ~~^~~ signal.h:275:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 275  if ( i < r  i > n  r )  ~~^~~~~~~ signal.h:278:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 278  b = (i + r) < n  1 ? (i + r) : n  1;  ~~~~~~~~^~~~~~~ signal.h: In instantiation of ‘size_t local_maxima(T*, size_t, int, int*) [with T = double; size_t = long unsigned int]’: matterExports.cpp:312:38: required from here signal.h:272:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 272  for ( int i = 0; i < n; i++ )  ~~^~~ signal.h:275:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 275  if ( i < r  i > n  r )  ~~^~~~~~~ signal.h:278:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 278  b = (i + r) < n  1 ? (i + r) : n  1;  ~~~~~~~~^~~~~~~ signal.h: In instantiation of ‘size_t peak_boundaries(T*, size_t, int, int*, size_t, int*, int*) [with T = int; size_t = long unsigned int]’: matterExports.cpp:331:48: required from here signal.h:304:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 304  for ( int i = 0; i < npeaks; i++ )  ~~^~~~~~~~ signal.h:329:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 329  for ( int j = peaks[i] + 1; j < n; j++ )  ~~^~~ signal.h:335:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 335  int b = (j + r) < n  1 ? (j + r) : n  1;  ~~~~~~~~^~~~~~~ signal.h: In instantiation of ‘size_t peak_boundaries(T*, size_t, int, int*, size_t, int*, int*) [with T = double; size_t = long unsigned int]’: matterExports.cpp:336:48: required from here signal.h:304:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 304  for ( int i = 0; i < npeaks; i++ )  ~~^~~~~~~~ signal.h:329:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 329  for ( int j = peaks[i] + 1; j < n; j++ )  ~~^~~ signal.h:335:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 335  int b = (j + r) < n  1 ? (j + r) : n  1;  ~~~~~~~~^~~~~~~ In file included from matterExports.h:5, from matterExports.cpp:2: drle.h: In instantiation of ‘size_t recode_drle(CompressedVector<T>, SEXP, Tval*, Tval*, Tlen*, size_t) [with Tval = int; Tlen = int; size_t = long unsigned int; SEXP = SEXPREC*]’: drle.h:557:22: required from ‘SEXPREC* recode_drle(CompressedVector<T>, SEXP) [with T = int; SEXP = SEXPREC*]’ drle.h:580:30: required from here drle.h:533:12: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] 533  while ( i < XLENGTH(indx) && j < nruns )  ~~^~~~~~~~~~~~~~~ drle.h: In instantiation of ‘size_t recode_drle(CompressedVector<T>, SEXP, Tval*, Tval*, Tlen*, size_t) [with Tval = int; Tlen = double; size_t = long unsigned int; SEXP = SEXPREC*]’: drle.h:561:25: required from ‘SEXPREC* recode_drle(CompressedVector<T>, SEXP) [with T = int; SEXP = SEXPREC*]’ drle.h:580:30: required from here drle.h:533:12: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] drle.h: In instantiation of ‘size_t recode_drle(CompressedVector<T>, SEXP, Tval*, Tval*, Tlen*, size_t) [with Tval = double; Tlen = int; size_t = long unsigned int; SEXP = SEXPREC*]’: drle.h:557:22: required from ‘SEXPREC* recode_drle(CompressedVector<T>, SEXP) [with T = double; SEXP = SEXPREC*]’ drle.h:584:30: required from here drle.h:533:12: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] drle.h: In instantiation of ‘size_t recode_drle(CompressedVector<T>, SEXP, Tval*, Tval*, Tlen*, size_t) [with Tval = double; Tlen = double; size_t = long unsigned int; SEXP = SEXPREC*]’: drle.h:561:25: required from ‘SEXPREC* recode_drle(CompressedVector<T>, SEXP) [with T = double; SEXP = SEXPREC*]’ drle.h:584:30: required from here drle.h:533:12: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] drle.h: In instantiation of ‘size_t CompressedVector<T>::getElements(SEXP, T*) [with T = int; size_t = long unsigned int; SEXP = SEXPREC*]’: drle.h:369:4: required from ‘SEXPREC* CompressedVector<T>::getElements(SEXP) [with T = int; SEXP = SEXPREC*]’ drle.h:599:29: required from here drle.h:352:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] 352  for ( j = 0; j < ni; j++ )  ~~^~~~ drle.h: In instantiation of ‘size_t CompressedVector<T>::getElements(SEXP, T*) [with T = double; size_t = long unsigned int; SEXP = SEXPREC*]’: drle.h:369:4: required from ‘SEXPREC* CompressedVector<T>::getElements(SEXP) [with T = double; SEXP = SEXPREC*]’ drle.h:603:29: required from here drle.h:352:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] In file included from matter.h:6, from matterExports.h:7, from matterExports.cpp:2: ops.h: In instantiation of ‘size_t DeferredOps::apply(T*, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’: matter.h:83:5: required from ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matter.h:153:32: required from here ops.h:187:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 187  for ( index_t j = 0; j < size; j++ )  ~~^~~~~~ ops.h: In instantiation of ‘size_t DeferredOps::apply(T*, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’: matter.h:83:5: required from ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matter.h:157:36: required from here ops.h:187:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] ops.h: In instantiation of ‘size_t DeferredOps::apply(T*, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’: matter.h:83:5: required from ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matter.h:165:33: required from here ops.h:187:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] In file included from drle.h:4, from matterExports.h:5, from matterExports.cpp:2: matterDefines.h: In instantiation of ‘size_t ArrayInterface::transpose_index(T*, SEXP, bool) [with T = long int; size_t = long unsigned int; SEXP = SEXPREC*]’: matter.h:116:5: required from ‘size_t MatterArray::get_elements(SEXP, T*, int) [with T = unsigned char; size_t = long unsigned int; SEXP = SEXPREC*]’ matter.h:209:31: required from here matterDefines.h:320:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [Wsigncompare] 320  for ( size_t j = 0; j < XLENGTH(indx); j++ )  ~~^~~~~~~~~~~~~~~ In file included from matterExports.h:8, from matterExports.cpp:2: search.h: In instantiation of ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = int; Tval = int; index_t = long int; size_t = long unsigned int]’: search.h:275:25: required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = int; Tval = int; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’ search.h:290:72: required from here search.h:225:32: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 225  for ( index_t i = pos[j]; i < xlen; i++ )  ~~^~~~~~ search.h: In instantiation of ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = double; Tval = int; index_t = long int; size_t = long unsigned int]’: search.h:275:25: required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = double; Tval = int; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’ search.h:294:72: required from here search.h:225:32: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] search.h: In instantiation of ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = int; index_t = long int; size_t = long unsigned int]’: search.h:275:25: required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = int; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’ search.h:298:72: required from here search.h:225:32: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] search.h: In instantiation of ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = int; Tval = double; index_t = long int; size_t = long unsigned int]’: search.h:275:25: required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = int; Tval = double; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’ search.h:308:69: required from here search.h:225:32: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] search.h: In instantiation of ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = double; Tval = double; index_t = long int; size_t = long unsigned int]’: search.h:275:25: required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = double; Tval = double; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’ search.h:312:69: required from here search.h:225:32: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] search.h: In instantiation of ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = double; index_t = long int; size_t = long unsigned int]’: search.h:275:25: required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = double; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’ search.h:316:69: required from here search.h:225:32: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] In file included from matterExports.h:9, from matterExports.cpp:2: sparse.h: In instantiation of ‘size_t SparseArray::get_compressed_region(index_t, index_t, size_t, Tval*, int) [with Tind = int; Tval = int; size_t = long unsigned int; index_t = long int]’: sparse.h:402:9: required from ‘size_t SparseArray::get_region(index_t, size_t, Tval*, int) [with Tind = int; Tval = int; size_t = long unsigned int; index_t = long int]’ sparse.h:433:47: required from here sparse.h:336:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 336  if ( i < 0  i + size > sparse_extent() )  ~~~~~~~~~^~~~~~~~~~~~~~~~~ sparse.h:362:24: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 362  if ( ii < 0  ii >= size )  ~~~^~~~~~~ sparse.h: In instantiation of ‘size_t SparseArray::get_compressed_region(index_t, index_t, size_t, Tval*, int) [with Tind = double; Tval = int; size_t = long unsigned int; index_t = long int]’: sparse.h:402:9: required from ‘size_t SparseArray::get_region(index_t, size_t, Tval*, int) [with Tind = double; Tval = int; size_t = long unsigned int; index_t = long int]’ sparse.h:436:50: required from here sparse.h:336:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 336  if ( i < 0  i + size > sparse_extent() )  ~~~~~~~~~^~~~~~~~~~~~~~~~~ sparse.h:362:24: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 362  if ( ii < 0  ii >= size )  ~~~^~~~~~~ sparse.h: In instantiation of ‘size_t SparseArray::get_compressed_region(index_t, index_t, size_t, Tval*, int) [with Tind = int; Tval = double; size_t = long unsigned int; index_t = long int]’: sparse.h:402:9: required from ‘size_t SparseArray::get_region(index_t, size_t, Tval*, int) [with Tind = int; Tval = double; size_t = long unsigned int; index_t = long int]’ sparse.h:446:47: required from here sparse.h:336:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 336  if ( i < 0  i + size > sparse_extent() )  ~~~~~~~~~^~~~~~~~~~~~~~~~~ sparse.h:362:24: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 362  if ( ii < 0  ii >= size )  ~~~^~~~~~~ sparse.h: In instantiation of ‘size_t SparseArray::get_compressed_region(index_t, index_t, size_t, Tval*, int) [with Tind = double; Tval = double; size_t = long unsigned int; index_t = long int]’: sparse.h:402:9: required from ‘size_t SparseArray::get_region(index_t, size_t, Tval*, int) [with Tind = double; Tval = double; size_t = long unsigned int; index_t = long int]’ sparse.h:449:50: required from here sparse.h:336:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 336  if ( i < 0  i + size > sparse_extent() )  ~~~~~~~~~^~~~~~~~~~~~~~~~~ sparse.h:362:24: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 362  if ( ii < 0  ii >= size )  ~~~^~~~~~~ In file included from matterExports.h:6, from matterExports.cpp:2: atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = char; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’: atoms.h:318:59: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:69:42: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’: atoms.h:320:68: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:69:42: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’: atoms.h:322:62: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:69:42: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short unsigned int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’: atoms.h:324:63: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:69:42: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’: atoms.h:326:62: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:69:42: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’: atoms.h:328:63: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:69:42: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’: atoms.h:330:62: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:69:42: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long unsigned int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’: atoms.h:332:63: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:69:42: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = float; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’: atoms.h:334:60: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:69:42: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = double; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’: atoms.h:336:61: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:69:42: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = char; Tout = int; size_t = long unsigned int; index_t = long int]’: atoms.h:318:59: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:73:44: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = int; size_t = long unsigned int; index_t = long int]’: atoms.h:320:68: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:73:44: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short int; Tout = int; size_t = long unsigned int; index_t = long int]’: atoms.h:322:62: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:73:44: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short unsigned int; Tout = int; size_t = long unsigned int; index_t = long int]’: atoms.h:324:63: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:73:44: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = int; Tout = int; size_t = long unsigned int; index_t = long int]’: atoms.h:326:62: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:73:44: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned int; Tout = int; size_t = long unsigned int; index_t = long int]’: atoms.h:328:63: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:73:44: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long int; Tout = int; size_t = long unsigned int; index_t = long int]’: atoms.h:330:62: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:73:44: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long unsigned int; Tout = int; size_t = long unsigned int; index_t = long int]’: atoms.h:332:63: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:73:44: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = float; Tout = int; size_t = long unsigned int; index_t = long int]’: atoms.h:334:60: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:73:44: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = double; Tout = int; size_t = long unsigned int; index_t = long int]’: atoms.h:336:61: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:73:44: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = char; Tout = double; size_t = long unsigned int; index_t = long int]’: atoms.h:318:59: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:77:44: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = double; size_t = long unsigned int; index_t = long int]’: atoms.h:320:68: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:77:44: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short int; Tout = double; size_t = long unsigned int; index_t = long int]’: atoms.h:322:62: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:77:44: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short unsigned int; Tout = double; size_t = long unsigned int; index_t = long int]’: atoms.h:324:63: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:77:44: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = int; Tout = double; size_t = long unsigned int; index_t = long int]’: atoms.h:326:62: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:77:44: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned int; Tout = double; size_t = long unsigned int; index_t = long int]’: atoms.h:328:63: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:77:44: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long int; Tout = double; size_t = long unsigned int; index_t = long int]’: atoms.h:330:62: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:77:44: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long unsigned int; Tout = double; size_t = long unsigned int; index_t = long int]’: atoms.h:332:63: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:77:44: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = float; Tout = double; size_t = long unsigned int; index_t = long int]’: atoms.h:334:60: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:77:44: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = double; Tout = double; size_t = long unsigned int; index_t = long int]’: atoms.h:336:61: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:77:44: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = char; size_t = long unsigned int; index_t = long int]’: atoms.h:347:60: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:98:44: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’: atoms.h:349:69: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:98:44: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = short int; size_t = long unsigned int; index_t = long int]’: atoms.h:351:63: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:98:44: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = short unsigned int; size_t = long unsigned int; index_t = long int]’: atoms.h:353:64: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:98:44: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = int; size_t = long unsigned int; index_t = long int]’: atoms.h:355:63: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:98:44: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = unsigned int; size_t = long unsigned int; index_t = long int]’: atoms.h:357:64: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:98:44: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = long int; size_t = long unsigned int; index_t = long int]’: atoms.h:359:63: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:98:44: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = long unsigned int; size_t = long unsigned int; index_t = long int]’: atoms.h:361:64: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:98:44: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = float; size_t = long unsigned int; index_t = long int]’: atoms.h:363:61: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:98:44: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = double; size_t = long unsigned int; index_t = long int]’: atoms.h:365:62: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:98:44: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = char; size_t = long unsigned int; index_t = long int]’: atoms.h:347:60: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:101:46: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’: atoms.h:349:69: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:101:46: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = short int; size_t = long unsigned int; index_t = long int]’: atoms.h:351:63: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:101:46: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = short unsigned int; size_t = long unsigned int; index_t = long int]’: atoms.h:353:64: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:101:46: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = int; size_t = long unsigned int; index_t = long int]’: atoms.h:355:63: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:101:46: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = unsigned int; size_t = long unsigned int; index_t = long int]’: atoms.h:357:64: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:101:46: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = long int; size_t = long unsigned int; index_t = long int]’: atoms.h:359:63: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:101:46: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = long unsigned int; size_t = long unsigned int; index_t = long int]’: atoms.h:361:64: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:101:46: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = float; size_t = long unsigned int; index_t = long int]’: atoms.h:363:61: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:101:46: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = double; size_t = long unsigned int; index_t = long int]’: atoms.h:365:62: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:101:46: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = char; size_t = long unsigned int; index_t = long int]’: atoms.h:347:60: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:104:46: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’: atoms.h:349:69: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:104:46: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = short int; size_t = long unsigned int; index_t = long int]’: atoms.h:351:63: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:104:46: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = short unsigned int; size_t = long unsigned int; index_t = long int]’: atoms.h:353:64: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:104:46: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = int; size_t = long unsigned int; index_t = long int]’: atoms.h:355:63: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:104:46: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = unsigned int; size_t = long unsigned int; index_t = long int]’: atoms.h:357:64: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:104:46: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = long int; size_t = long unsigned int; index_t = long int]’: atoms.h:359:63: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:104:46: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = long unsigned int; size_t = long unsigned int; index_t = long int]’: atoms.h:361:64: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:104:46: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = float; size_t = long unsigned int; index_t = long int]’: atoms.h:363:61: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:104:46: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = double; size_t = long unsigned int; index_t = long int]’: atoms.h:365:62: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’ matterExports.cpp:104:46: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = char; Tout = char; size_t = long unsigned int; index_t = long int]’: atoms.h:318:59: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’ matter.h:493:46: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = char; size_t = long unsigned int; index_t = long int]’: atoms.h:320:68: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’ matter.h:493:46: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short int; Tout = char; size_t = long unsigned int; index_t = long int]’: atoms.h:322:62: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’ matter.h:493:46: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short unsigned int; Tout = char; size_t = long unsigned int; index_t = long int]’: atoms.h:324:63: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’ matter.h:493:46: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = int; Tout = char; size_t = long unsigned int; index_t = long int]’: atoms.h:326:62: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’ matter.h:493:46: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned int; Tout = char; size_t = long unsigned int; index_t = long int]’: atoms.h:328:63: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’ matter.h:493:46: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long int; Tout = char; size_t = long unsigned int; index_t = long int]’: atoms.h:330:62: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’ matter.h:493:46: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long unsigned int; Tout = char; size_t = long unsigned int; index_t = long int]’: atoms.h:332:63: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’ matter.h:493:46: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = float; Tout = char; size_t = long unsigned int; index_t = long int]’: atoms.h:334:60: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’ matter.h:493:46: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = double; Tout = char; size_t = long unsigned int; index_t = long int]’: atoms.h:336:61: required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’ atoms.h:383:7: required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’ matter.h:493:46: required from here atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 279  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 288  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = char; size_t = long unsigned int; index_t = long int]’: atoms.h:347:60: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ matter.h:536:52: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’: atoms.h:349:69: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ matter.h:536:52: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = short int; size_t = long unsigned int; index_t = long int]’: atoms.h:351:63: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ matter.h:536:52: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = short unsigned int; size_t = long unsigned int; index_t = long int]’: atoms.h:353:64: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ matter.h:536:52: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = int; size_t = long unsigned int; index_t = long int]’: atoms.h:355:63: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ matter.h:536:52: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = unsigned int; size_t = long unsigned int; index_t = long int]’: atoms.h:357:64: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ matter.h:536:52: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = long int; size_t = long unsigned int; index_t = long int]’: atoms.h:359:63: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ matter.h:536:52: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = long unsigned int; size_t = long unsigned int; index_t = long int]’: atoms.h:361:64: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ matter.h:536:52: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = float; size_t = long unsigned int; index_t = long int]’: atoms.h:363:61: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ matter.h:536:52: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = double; size_t = long unsigned int; index_t = long int]’: atoms.h:365:62: required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ atoms.h:405:7: required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’ matter.h:536:52: required from here atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 298  if ( pos + size >= extent(atom) )  ~~~~~~~~~~~^~~~~~~~~~~~~~~ atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 301  for ( index_t i = 0; i < size; i++ )  ~~^~~~~~ In file included from search.h:5, from matterExports.h:8, from matterExports.cpp:2: signal.h: In instantiation of ‘Ty interp1(Tx, Tx*, Ty*, size_t, size_t, double, int, int, bool) [with Tx = int; Ty = int; size_t = long unsigned int]’: search.h:229:30: required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = int; Tval = int; index_t = long int; size_t = long unsigned int]’ search.h:275:25: required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = int; Tval = int; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’ search.h:290:72: required from here signal.h:97:29: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] 97  for ( index_t i = init; i < end && i >= 0; i += k )  ~~^~~~~ signal.h: In instantiation of ‘Ty interp1(Tx, Tx*, Ty*, size_t, size_t, double, int, int, bool) [with Tx = double; Ty = int; size_t = long unsigned int]’: search.h:229:30: required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = double; Tval = int; index_t = long int; size_t = long unsigned int]’ search.h:275:25: required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = double; Tval = int; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’ search.h:294:72: required from here signal.h:97:29: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] signal.h: In instantiation of ‘Ty interp1(Tx, Tx*, Ty*, size_t, size_t, double, int, int, bool) [with Tx = SEXPREC*; Ty = int; size_t = long unsigned int]’: search.h:229:30: required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = int; index_t = long int; size_t = long unsigned int]’ search.h:275:25: required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = int; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’ search.h:298:72: required from here signal.h:97:29: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] signal.h: In instantiation of ‘Ty interp1(Tx, Tx*, Ty*, size_t, size_t, double, int, int, bool) [with Tx = int; Ty = double; size_t = long unsigned int]’: search.h:229:30: required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = int; Tval = double; index_t = long int; size_t = long unsigned int]’ search.h:275:25: required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = int; Tval = double; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’ search.h:308:69: required from here signal.h:97:29: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] signal.h: In instantiation of ‘Ty interp1(Tx, Tx*, Ty*, size_t, size_t, double, int, int, bool) [with Tx = double; Ty = double; size_t = long unsigned int]’: search.h:229:30: required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = double; Tval = double; index_t = long int; size_t = long unsigned int]’ search.h:275:25: required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = double; Tval = double; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’ search.h:312:69: required from here signal.h:97:29: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] signal.h: In instantiation of ‘Ty interp1(Tx, Tx*, Ty*, size_t, size_t, double, int, int, bool) [with Tx = SEXPREC*; Ty = double; size_t = long unsigned int]’: search.h:229:30: required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = double; index_t = long int; size_t = long unsigned int]’ search.h:275:25: required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = double; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’ search.h:316:69: required from here signal.h:97:29: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [Wsigncompare] In file included from matterExports.h:9, from matterExports.cpp:2: sparse.h: In instantiation of ‘void SparseArray::copy_domain(index_t, size_t, T*) [with T = int; index_t = long int; size_t = long unsigned int]’: sparse.h:349:5: required from ‘size_t SparseArray::get_compressed_region(index_t, index_t, size_t, Tval*, int) [with Tind = int; Tval = int; size_t = long unsigned int; index_t = long int]’ sparse.h:402:9: required from ‘size_t SparseArray::get_region(index_t, size_t, Tval*, int) [with Tind = int; Tval = int; size_t = long unsigned int; index_t = long int]’ sparse.h:433:47: required from here sparse.h:190:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] 190  if ( i < 0  i + size > sparse_extent() )  ~~~~~~~~~^~~~~~~~~~~~~~~~~ sparse.h: In instantiation of ‘void SparseArray::copy_domain(index_t, size_t, T*) [with T = double; index_t = long int; size_t = long unsigned int]’: sparse.h:349:5: required from ‘size_t SparseArray::get_compressed_region(index_t, index_t, size_t, Tval*, int) [with Tind = double; Tval = int; size_t = long unsigned int; index_t = long int]’ sparse.h:402:9: required from ‘size_t SparseArray::get_region(index_t, size_t, Tval*, int) [with Tind = double; Tval = int; size_t = long unsigned int; index_t = long int]’ sparse.h:436:50: required from here sparse.h:190:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [Wsigncompare] In file included from matterExports.h:8, from matterExports.cpp:2: search.h: In function ‘index_t binary_search(T, T*, size_t, size_t, double, int, int, bool, bool, int) [with T = double]’: search.h:104:27: warning: ‘delta’ may be used uninitialized in this function [Wmaybeuninitialized] 104  else if ( (mid == right && delta > 0) && (nearest  dright <= tol) )  ~~~~~~~~~~~~~~^~~~~~~~~~~~~ search.h: In function ‘index_t binary_search(T, T*, size_t, size_t, double, int, int, bool, bool, int) [with T = SEXPREC*]’: search.h:104:27: warning: ‘delta’ may be used uninitialized in this function [Wmaybeuninitialized] 104  else if ( (mid == right && delta > 0) && (nearest  dright <= tol) )  ~~~~~~~~~~~~~~^~~~~~~~~~~~~ search.h: In function ‘index_t binary_search(T, T*, size_t, size_t, double, int, int, bool, bool, int) [with T = int]’: search.h:104:27: warning: ‘delta’ may be used uninitialized in this function [Wmaybeuninitialized] 104  else if ( (mid == right && delta > 0) && (nearest  dright <= tol) )  ~~~~~~~~~~~~~~^~~~~~~~~~~~~ g++ std=gnu++14 shared L/home/biocbuild/bbs3.16bioc/R/lib L/usr/local/lib o matter.so altrep.o init.o matterExports.o L/home/biocbuild/bbs3.16bioc/R/lib lR installing to /home/biocbuild/bbs3.16bioc/R/sitelibrary/00LOCKmatter/00new/matter/libs ** R ** bytecompile and prepare package for lazy loading Creating a new generic function for ‘apply’ in package ‘matter’ Creating a new generic function for ‘scale’ in package ‘matter’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (matter)
matter.Rcheck/tests/testthat.Rout
R version 4.2.3 (20230315)  "Shortstop Beagle" Copyright (C) 2023 The R Foundation for Statistical Computing Platform: x86_64pclinuxgnu (64bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for online help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(matter) Loading required package: BiocParallel Loading required package: Matrix Attaching package: 'matter' The following objects are masked from 'package:base': apply, scale > > test_check("matter") [ FAIL 0  WARN 0  SKIP 0  PASS 725 ] > > proc.time() user system elapsed 8.924 0.414 9.319
matter.Rcheck/matterEx.timings
name  user  system  elapsed  
asearch  0.001  0.000  0.001  
biglm  0.059  0.000  0.059  
binvec  0.002  0.000  0.002  
bsearch  0.001  0.000  0.001  
checksum  0.016  0.000  0.015  
chunkApply  0.661  0.012  0.673  
colscale  0.098  0.000  0.098  
colsweep  0.013  0.004  0.017  
deferredops  0.045  0.000  0.045  
drleclass  0.000  0.001  0.001  
findpeaks  0.000  0.001  0.000  
matterclass  0.022  0.002  0.024  
matter_arrclass  0.034  0.000  0.035  
matter_fctclass  0.012  0.000  0.011  
matter_listclass  0.007  0.000  0.007  
matter_strclass  0.010  0.000  0.009  
prcomp  0.048  0.000  0.048  
profmem  0.448  0.000  0.448  
rowStats  0.083  0.000  0.083  
sparse_arrclass  0.006  0.000  0.006  
streamstats  0.006  0.000  0.006  
struct  0.005  0.000  0.005  
summarystats  0.119  0.000  0.119  
uuid  0.001  0.000  0.001  