Multiple platform build/check report for BioC 3.17 - BUILD results for mAPKL on palomino3

Back to Multiple platform build/check report for BioC 3.17: simplified long

[M]

This page was generated on 2023-10-02 11:36:32 -0400 (Mon, 02 Oct 2023).

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 22.04.2 LTS)	x86_64	4.3.1 (2023-06-16) -- "Beagle Scouts"	4626
palomino3	Windows Server 2022 Datacenter	x64	4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts"	4379
merida1	macOS 12.6.4 Monterey	x86_64	4.3.1 (2023-06-16) -- "Beagle Scouts"	4395
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

mAPKL 1.30.0 (landing page)
Argiris Sakellariou

Snapshot Date: 2023-10-01 14:00:12 -0400 (Sun, 01 Oct 2023)

git_url: https://git.bioconductor.org/packages/mAPKL

git_branch: RELEASE_3_17

git_last_commit: 2369411

git_last_commit_date: 2023-04-25 10:37:13 -0400 (Tue, 25 Apr 2023)

nebbiolo1

Linux (Ubuntu 22.04.2 LTS) / x86_64

ERROR

skipped

palomino3

Windows Server 2022 Datacenter / x64

ERROR

skipped

merida1

macOS 12.6.4 Monterey / x86_64

ERROR

skipped

BUILD results for mAPKL on palomino3

To the developers/maintainers of the mAPKL package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mAPKL.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: mAPKL

Version: 1.30.0

Command: chmod a+r mAPKL -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data mAPKL

StartedAt: 2023-10-01 20:07:16 -0400 (Sun, 01 Oct 2023)

EndedAt: 2023-10-01 20:07:50 -0400 (Sun, 01 Oct 2023)

EllapsedTime: 34.2 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r mAPKL -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data mAPKL
###
##############################################################################
##############################################################################


* checking for file 'mAPKL/DESCRIPTION' ... OK
* preparing 'mAPKL':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'mAPKL.Rnw' using knitr

Quitting from lines 87-92 [unnamed-chunk-1] (mAPKL.Rnw)
Error: processing vignette 'mAPKL.Rnw' failed with diagnostics:
cannot xtfrm data frames
--- failed re-building 'mAPKL.Rnw'

SUMMARY: processing the following file failed:
  'mAPKL.Rnw'

Error: Vignette re-building failed.
Execution halted