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CHECK report for lpsymphony on nebbiolo1

This page was generated on 2021-01-25 11:50:56 -0500 (Mon, 25 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE lpsymphony PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 976/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
lpsymphony 1.18.0
Vladislav Kim
Snapshot Date: 2021-01-24 14:40:16 -0500 (Sun, 24 Jan 2021)
URL: https://git.bioconductor.org/packages/lpsymphony
Branch: RELEASE_3_12
Last Commit: e36fafe
Last Changed Date: 2020-10-27 11:10:03 -0500 (Tue, 27 Oct 2020)
malbec1 Linux (Ubuntu 18.04.5 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK [ OK ]
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: lpsymphony
Version: 1.18.0
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:lpsymphony.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings lpsymphony_1.18.0.tar.gz
StartedAt: 2021-01-24 22:06:14 -0500 (Sun, 24 Jan 2021)
EndedAt: 2021-01-24 22:07:13 -0500 (Sun, 24 Jan 2021)
EllapsedTime: 59.1 seconds
RetCode: 0
Status:  OK 
CheckDir: lpsymphony.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:lpsymphony.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings lpsymphony_1.18.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘lpsymphony/DESCRIPTION’ ... OK
* this is package ‘lpsymphony’ version ‘1.18.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘lpsymphony’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 22.4Mb
  sub-directories of 1Mb or more:
    libs  22.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘Rglpk’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking include directives in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
File ‘/home/biocbuild/bbs-3.12-bioc/R/library/lpsymphony/libs/lpsymphony.so’:
  Found ‘_ZSt4cerr’, possibly from ‘std::cerr’ (C++)
  Found ‘_ZSt4cout’, possibly from ‘std::cout’ (C++)
  Found ‘__printf_chk’, possibly from ‘printf’ (C)
  Found ‘abort’, possibly from ‘abort’ (C)
  Found ‘exit’, possibly from ‘exit’ (C)
  Found ‘putchar’, possibly from ‘putchar’ (C)
  Found ‘puts’, possibly from ‘printf’ (C), ‘puts’ (C)
  Found ‘random’, possibly from ‘random’ (C)
  Found ‘srandom’, possibly from ‘srandom’ (C)
  Found ‘stderr’, possibly from ‘stderr’ (C)
  Found ‘stdout’, possibly from ‘stdout’ (C)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 4 NOTEs
See
  ‘/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony.Rcheck/00check.log’
for details.



Installation output

lpsymphony.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL lpsymphony
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’
* installing *source* package ‘lpsymphony’ ...
** using staged installation
configure: loading site script /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/share/config.site
checking build system type... x86_64-unknown-linux-gnu
checking whether we want to compile in debug mode... no
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
configure: C compiler options are: -w -g -O2  
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking whether C++ compiler g++ works... yes
configure: C++ compiler options are: -w -g -O2  
configure: Trying to determine Fortran compiler name
checking for gfortran... gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
configure: Fortran compiler options are: -O3 -pipe  
checking for egrep... grep -E
checking whether ln -s works... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking dependency style of gcc... none
checking dependency style of g++... none
checking whether to enable maintainer-specific portions of Makefiles... no
checking host system type... x86_64-unknown-linux-gnu
checking for a sed that does not truncate output... /usr/bin/sed
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for /usr/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking how to recognise dependent libraries... pass_all
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking how to run the C++ preprocessor... g++ -E
checking the maximum length of command line arguments... 32768
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for objdir... .libs
checking for ar... ar
checking for ranlib... ranlib
checking for strip... strip
checking if gcc supports -fno-rtti -fno-exceptions... yes
checking for gcc option to produce PIC... -fPIC
checking if gcc PIC flag -fPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by g++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC
checking if g++ PIC flag -fPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
appending configuration tag "F77" to libtool
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
checking if gfortran supports -c -o file.o... yes
checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
configure: Build is "x86_64-unknown-linux-gnu".
checking if library version is set... no
checking whether source of project Blas is available and should be compiled... no, source file ./ThirdParty/Blas/daxpy.f not available
checking whether source of project Lapack is available and should be compiled... no, source file ./ThirdParty/Lapack/LAPACK/SRC/dlarf.f not available
checking whether source of project Glpk is available and should be compiled... no, source file ./ThirdParty/Glpk/glpk/src/glplpx01.c not available
checking whether source of project Sample is available and should be compiled... no
checking whether source of project miblib3 is available and should be compiled... no
checking whether source of project CoinUtils is available and should be compiled... yes, source in CoinUtils
checking whether source of project Osi is available and should be compiled... yes, source in Osi
checking whether source of project Clp is available and should be compiled... yes, source in Clp
checking whether source of project Cgl is available and should be compiled... yes, source in Cgl
checking whether source of project DyLP is available and should be compiled... no
checking whether source of project Vol is available and should be compiled... no
checking whether source of project SYMPHONY is available and should be compiled... yes, source in SYMPHONY
checking whether Clp is required... yes
checking which command should be used to link input files... ln -s
configure: creating ./config.status
config.status: creating Makefile
config.status: executing depfiles commands
configure: configuring in CoinUtils
configure: running /bin/bash './configure' --prefix=/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY  '--enable-static' '--disable-shared' '--with-pic' '--with-application=no' '--disable-dependency-tracking' '--disable-zlib' '--disable-bzlib' '--disable-cplex-libcheck' '--disable-glpk-libcheck' '--disable-osl-libcheck' '--disable-soplex-libcheck' '--disable-xpress-libcheck' 'CFLAGS=-w -g -O2' 'CXXFLAGS=-w -g -O2' 'CC=gcc' --cache-file=/dev/null --srcdir=.
configure: loading site script /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/share/config.site
checking build system type... x86_64-unknown-linux-gnu
checking for svnversion... no
checking whether we want to compile in debug mode... no
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
configure: C compiler options are: -w -g -O2   -DCOINUTILS_BUILD
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking whether C++ compiler g++ works... yes
configure: C++ compiler options are: -w -g -O2   -DCOINUTILS_BUILD
configure: Trying to determine Fortran compiler name
checking for gfortran... gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
configure: Fortran compiler options are: -O3 -pipe  
checking how to get verbose linking output from gfortran... -v
checking for Fortran libraries of gfortran...  -L/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/9/../../.. -lgfortran -lm -lgcc_s -lquadmath
configure: Corrected Fortran libraries:  -L/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/9/../../.. -lgfortran -lm -lquadmath
checking for dummy main to link with Fortran libraries... none
checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore
checking for egrep... grep -E
checking whether ln -s works... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking dependency style of gcc... none
checking dependency style of g++... none
checking whether to enable maintainer-specific portions of Makefiles... no
configure: Using libtool script in directory ..
checking if library version is set... 13:6:10
checking cmath usability... yes
checking cmath presence... yes
checking for cmath... yes
checking cfloat usability... yes
checking cfloat presence... yes
checking for cfloat... yes
checking cieeefp usability... no
checking cieeefp presence... no
checking for cieeefp... no
checking ieeefp.h usability... no
checking ieeefp.h presence... no
checking for ieeefp.h... no
checking whether isfinite is declared... no
checking whether finite is declared... yes
checking for cmath... (cached) yes
checking for cfloat... (cached) yes
checking for cieeefp... (cached) no
checking for ieeefp.h... (cached) no
checking whether isnan is declared... no
checking whether std::isnan(42.42) is declared... yes
checking cinttypes usability... yes
checking cinttypes presence... yes
checking for cinttypes... yes
checking cstdint usability... yes
checking cstdint presence... yes
checking for cstdint... yes
checking for int64_t... yes
checking for intptr_t... yes
checking windows.h usability... no
checking windows.h presence... no
checking for windows.h... no
checking endian.h usability... yes
checking endian.h presence... yes
checking for endian.h... yes
checking for pkg-config... pkg-config
checking pkg-config is at least version 0.16.0... yes
checking whether -lblas has BLAS... yes: -lblas
checking whether LAPACK is already available with BLAS library... no
checking whether -llapack has LAPACK... yes: -llapack
checking for COIN-OR package Glpk... not given: No package 'coinglpk' found
checking for COIN-OR package Sample... not given: No package 'coindatasample' found
checking for COIN-OR package Netlib... not given: No package 'coindatanetlib' found
checking whether this is a VPATH configuration... no
configure: configuring doxygen documentation options
checking for doxygen... no
checking for latex... yes
checking for dot... YES
checking which command should be used to link input files... ln -s
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating test/Makefile
config.status: creating coinutils.pc
config.status: creating coinutils-uninstalled.pc
config.status: creating doxydoc/doxygen.conf
config.status: creating src/config.h
config.status: creating src/config_coinutils.h
config.status: executing depfiles commands
configure: In case of trouble, first consult the troubleshooting page at https://projects.coin-or.org/BuildTools/wiki/user-troubleshooting
configure: Configuration of CoinUtils successful
configure: configuring in Osi
configure: running /bin/bash './configure' --prefix=/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY  '--enable-static' '--disable-shared' '--with-pic' '--with-application=no' '--disable-dependency-tracking' '--disable-zlib' '--disable-bzlib' '--disable-cplex-libcheck' '--disable-glpk-libcheck' '--disable-osl-libcheck' '--disable-soplex-libcheck' '--disable-xpress-libcheck' 'CFLAGS=-w -g -O2' 'CXXFLAGS=-w -g -O2' 'CC=gcc' --cache-file=/dev/null --srcdir=.
configure: loading site script /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/share/config.site
checking build system type... x86_64-unknown-linux-gnu
checking for svnversion... no
checking whether we want to compile in debug mode... no
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
configure: C compiler options are: -w -g -O2   -DOSI_BUILD
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking whether C++ compiler g++ works... yes
configure: C++ compiler options are: -w -g -O2   -DOSI_BUILD
checking for egrep... grep -E
checking whether ln -s works... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking dependency style of gcc... none
checking dependency style of g++... none
checking whether to enable maintainer-specific portions of Makefiles... no
configure: Using libtool script in directory ..
checking if library version is set... 13:4:12
checking for pkg-config... pkg-config
checking pkg-config is at least version 0.16.0... yes
checking for COIN-OR package CoinUtils... yes: 2.10.6 
checking for COIN-OR package Glpk... not given: No package 'coinglpk' found
checking for COIN-OR package SoPlex... not given: No package 'coinsoplex' found
checking for COIN-OR package Sample... not given: No package 'coindatasample' found
checking for COIN-OR package Netlib... not given: No package 'coindatanetlib' found
checking if user provides library for Cplex... no
checking if user provides library for Mosek... no
checking if user provides library for Xpress... no
checking if user provides library for Gurobi... no
configure: WARNING: No solver available, examples will not work.
configure: configuring doxygen documentation options
checking for doxygen... no
checking for latex... yes
checking for dot... YES
checking for doxygen doc'n for CoinUtils ... ../CoinUtils/doxydoc (tag)
checking cmath usability... yes
checking cmath presence... yes
checking for cmath... yes
checking cfloat usability... yes
checking cfloat presence... yes
checking for cfloat... yes
checking cieeefp usability... no
checking cieeefp presence... no
checking for cieeefp... no
checking ieeefp.h usability... no
checking ieeefp.h presence... no
checking for ieeefp.h... no
checking which command should be used to link input files... ln -s
configure: creating ./config.status
config.status: creating Makefile
config.status: creating examples/Makefile
config.status: creating src/Osi/Makefile
config.status: creating src/OsiCpx/Makefile
config.status: creating src/OsiGlpk/Makefile
config.status: creating src/OsiMsk/Makefile
config.status: creating src/OsiXpr/Makefile
config.status: creating src/OsiGrb/Makefile
config.status: creating src/OsiSpx/Makefile
config.status: creating src/OsiCommonTest/Makefile
config.status: creating test/Makefile
config.status: creating osi.pc
config.status: creating osi-uninstalled.pc
config.status: creating osi-unittests.pc
config.status: creating osi-unittests-uninstalled.pc
config.status: creating doxydoc/doxygen.conf
config.status: creating src/Osi/config.h
config.status: creating src/Osi/config_osi.h
config.status: executing depfiles commands
configure: In case of trouble, first consult the troubleshooting page at https://projects.coin-or.org/BuildTools/wiki/user-troubleshooting
configure: Configuration of Osi successful
configure: configuring in Clp
configure: running /bin/bash './configure' --prefix=/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY  '--enable-static' '--disable-shared' '--with-pic' '--with-application=no' '--disable-dependency-tracking' '--disable-zlib' '--disable-bzlib' '--disable-cplex-libcheck' '--disable-glpk-libcheck' '--disable-osl-libcheck' '--disable-soplex-libcheck' '--disable-xpress-libcheck' 'CFLAGS=-w -g -O2' 'CXXFLAGS=-w -g -O2' 'CC=gcc' --cache-file=/dev/null --srcdir=.
configure: loading site script /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/share/config.site
checking build system type... x86_64-unknown-linux-gnu
checking for svnversion... no
checking whether we want to compile in debug mode... no
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
configure: C compiler options are: -w -g -O2   -DCLP_BUILD
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking whether C++ compiler g++ works... yes
configure: C++ compiler options are: -w -g -O2   -DCLP_BUILD
checking for egrep... grep -E
checking whether ln -s works... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking dependency style of gcc... none
checking dependency style of g++... none
checking whether to enable maintainer-specific portions of Makefiles... no
configure: Using libtool script in directory ..
checking if library version is set... 14:6:13
checking for pkg-config... pkg-config
checking pkg-config is at least version 0.16.0... yes
checking for COIN-OR package CoinUtils... yes: 2.10.6 
checking for COIN-OR package Osi... yes: 0.107.4 
checking for COIN-OR package OsiTests... yes: 0.107.4 
checking for COIN-OR package Sample... not given: No package 'coindatasample' found
checking for COIN-OR package Netlib... not given: No package 'coindatanetlib' found
checking if user provides library for AMD... no
checking if user provides library for CHOLMOD... no
checking for COIN-OR package Glpk... not given: No package 'coinglpk' found
checking for COIN-OR package Mumps... not given: No package 'coinmumps' found
checking for COIN-OR package ASL... not given: No package 'coinasl' found
checking cmath usability... yes
checking cmath presence... yes
checking for cmath... yes
checking cfloat usability... yes
checking cfloat presence... yes
checking for cfloat... yes
checking cieeefp usability... no
checking cieeefp presence... no
checking for cieeefp... no
checking ieeefp.h usability... no
checking ieeefp.h presence... no
checking for ieeefp.h... no
checking whether this is a VPATH configuration... no
configure: configuring doxygen documentation options
checking for doxygen... no
checking for latex... yes
checking for dot... YES
checking for doxygen doc'n for CoinUtils ... ../CoinUtils/doxydoc (tag)
checking for doxygen doc'n for Osi ... ../Osi/doxydoc (tag)
checking which command should be used to link input files... ln -s
configure: creating ./config.status
config.status: creating Makefile
config.status: creating examples/Makefile
config.status: creating src/Makefile
config.status: creating src/OsiClp/Makefile
config.status: creating test/Makefile
config.status: creating clp.pc
config.status: creating clp-uninstalled.pc
config.status: creating osi-clp.pc
config.status: creating osi-clp-uninstalled.pc
config.status: creating doxydoc/doxygen.conf
config.status: creating src/config.h
config.status: creating src/config_clp.h
config.status: executing depfiles commands
configure: In case of trouble, first consult the troubleshooting page at https://projects.coin-or.org/BuildTools/wiki/user-troubleshooting
configure: Configuration of Clp successful
configure: configuring in Cgl
configure: running /bin/bash './configure' --prefix=/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY  '--enable-static' '--disable-shared' '--with-pic' '--with-application=no' '--disable-dependency-tracking' '--disable-zlib' '--disable-bzlib' '--disable-cplex-libcheck' '--disable-glpk-libcheck' '--disable-osl-libcheck' '--disable-soplex-libcheck' '--disable-xpress-libcheck' 'CFLAGS=-w -g -O2' 'CXXFLAGS=-w -g -O2' 'CC=gcc' --cache-file=/dev/null --srcdir=.
configure: loading site script /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/share/config.site
checking build system type... x86_64-unknown-linux-gnu
checking for svnversion... no
checking whether we want to compile in debug mode... no
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
configure: C compiler options are: -w -g -O2   -DCGL_BUILD
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking whether C++ compiler g++ works... yes
configure: C++ compiler options are: -w -g -O2   -DCGL_BUILD
checking for egrep... grep -E
checking whether ln -s works... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking dependency style of gcc... none
checking dependency style of g++... none
checking whether to enable maintainer-specific portions of Makefiles... no
configure: Using libtool script in directory ..
checking if library version is set... 10:4:9
checking for pkg-config... pkg-config
checking pkg-config is at least version 0.16.0... yes
checking for COIN-OR package CoinUtils... yes: 2.10.6 
checking for COIN-OR package Osi... yes: 0.107.4 
checking for COIN-OR package Sample... not given: No package 'coindatasample' found
checking for COIN-OR package OsiClp... yes: 1.16.6 
checking for COIN-OR package OsiCpx... not given: No package 'osi-cplex' found
checking for COIN-OR package OsiGlpk... not given: No package 'osi-glpk' found
checking for COIN-OR package OsiMsk... not given: No package 'osi-mosek' found
checking for COIN-OR package OsiXpr... not given: No package 'osi-xpress' found
checking for COIN-OR package OsiVol... not given: No package 'osi-vol' found
checking for COIN-OR package OsiDyLP... not given: No package 'osi-dylp' found
checking cmath usability... yes
checking cmath presence... yes
checking for cmath... yes
checking cfloat usability... yes
checking cfloat presence... yes
checking for cfloat... yes
checking cieeefp usability... no
checking cieeefp presence... no
checking for cieeefp... no
checking ieeefp.h usability... no
checking ieeefp.h presence... no
checking for ieeefp.h... no
configure: configuring doxygen documentation options
checking for doxygen... no
checking for latex... yes
checking for dot... YES
checking for doxygen doc'n for CoinUtils ... ../CoinUtils/doxydoc (tag)
checking whether this is a VPATH configuration... no
checking which command should be used to link input files... ln -s
configure: creating ./config.status
config.status: creating Makefile
config.status: creating examples/Makefile
config.status: creating src/Makefile
config.status: creating src/CglAllDifferent/Makefile
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config.status: executing depfiles commands
configure: In case of trouble, first consult the troubleshooting page at https://projects.coin-or.org/BuildTools/wiki/user-troubleshooting
configure: Configuration of Cgl successful
configure: configuring in SYMPHONY
configure: running /bin/bash './configure' --prefix=/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY  '--enable-static' '--disable-shared' '--with-pic' '--with-application=no' '--disable-dependency-tracking' '--disable-zlib' '--disable-bzlib' '--disable-cplex-libcheck' '--disable-glpk-libcheck' '--disable-osl-libcheck' '--disable-soplex-libcheck' '--disable-xpress-libcheck' 'CFLAGS=-w -g -O2' 'CXXFLAGS=-w -g -O2' 'CC=gcc' --cache-file=/dev/null --srcdir=.
configure: loading site script /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/share/config.site
checking build system type... x86_64-unknown-linux-gnu
checking for svnversion... no
checking whether we want to compile in debug mode... no
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
configure: C compiler options are: -w -g -O2   -DSYMPHONY_BUILD
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking whether C++ compiler g++ works... yes
configure: C++ compiler options are: -w -g -O2   -DSYMPHONY_BUILD
checking for egrep... grep -E
checking whether ln -s works... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking dependency style of gcc... none
checking dependency style of g++... none
checking whether to enable maintainer-specific portions of Makefiles... no
configure: Using libtool script in directory ..
checking if library version is set... 9:10:6
checking for pkg-config... pkg-config
checking pkg-config is at least version 0.16.0... yes
checking for COIN-OR package CoinDepend... yes: 2.10.6 0.107.4 
checking for COIN-OR package Clp... yes: 1.16.6 
checking for COIN-OR package DyLP... not given: No package 'osi-dylp' found
checking for COIN-OR package Vol... not given: No package 'osi-vol' found
checking for COIN-OR package Cgl... yes: 0.59.4 
checking for COIN-OR package OsiTests... yes: 0.107.4 
checking for COIN-OR package Sample... not given: No package 'coindatasample' found
checking for COIN-OR package Netlib... not given: No package 'coindatanetlib' found
checking for COIN-OR package Miplib3... not given: No package 'coindatamiplib3' found
checking for COIN-OR package Cpx... not given: No package 'osi-cplex' found
checking for COIN-OR package Glpk... not given: No package 'osi-glpk' found
checking for COIN-OR package Msk... not given: No package 'osi-mosek' found
checking for COIN-OR package Xpr... not given: No package 'osi-xpress' found
checking for SYMPHONY default solver... Clp
checking whether to compile with gmpl... no
checking whether to compile application library... no
checking if user provides library for Pvm... no
checking whether compiler supports OpenMP... no
checking whether this is a VPATH configuration... no
checking which command should be used to link input files... ln -s
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/OsiSym/Makefile
config.status: creating test/Makefile
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config.status: creating Applications/Makefile.Applications
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config.status: creating Applications/SPP+CUTS/Makefile
config.status: creating Applications/USER/Makefile
config.status: creating Applications/VRP/Makefile
config.status: creating symphony.pc
config.status: creating symphony-app.pc
config.status: creating symphony-uninstalled.pc
config.status: creating osi-sym.pc
config.status: creating osi-sym-uninstalled.pc
config.status: creating include/config.h
config.status: creating include/config_sym.h
config.status: executing depfiles commands
configure: In case of trouble, first consult the troubleshooting page at https://projects.coin-or.org/BuildTools/wiki/user-troubleshooting
configure: Configuration of SYMPHONY successful
configure: In case of trouble, first consult the troubleshooting page at https://projects.coin-or.org/BuildTools/wiki/user-troubleshooting
configure: Main configuration of SYMPHONY successful
** libs
make[1]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY'
Making all in CoinUtils
make[2]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils'
Making all in src
make[3]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src'
make  all-am
make[4]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src'
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 g++ -DHAVE_CONFIG_H -I. -I. -w -g -O2 -DCOINUTILS_BUILD -c CoinPresolveImpliedFree.cpp  -fPIC -DPIC -o CoinPresolveImpliedFree.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`     -w -g -O2   -DCOINUTILS_BUILD -c -o CoinPresolveIsolated.lo CoinPresolveIsolated.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -w -g -O2 -DCOINUTILS_BUILD -c CoinPresolveIsolated.cpp  -fPIC -DPIC -o CoinPresolveIsolated.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`     -w -g -O2   -DCOINUTILS_BUILD -c -o CoinPresolveMatrix.lo CoinPresolveMatrix.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -w -g -O2 -DCOINUTILS_BUILD -c CoinPresolveMatrix.cpp  -fPIC -DPIC -o CoinPresolveMatrix.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`     -w -g -O2   -DCOINUTILS_BUILD -c -o CoinPresolvePsdebug.lo CoinPresolvePsdebug.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -w -g -O2 -DCOINUTILS_BUILD -c CoinPresolvePsdebug.cpp  -fPIC -DPIC -o CoinPresolvePsdebug.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`     -w -g -O2   -DCOINUTILS_BUILD -c -o CoinPresolveMonitor.lo CoinPresolveMonitor.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -w -g -O2 -DCOINUTILS_BUILD -c CoinPresolveMonitor.cpp  -fPIC -DPIC -o CoinPresolveMonitor.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`     -w -g -O2   -DCOINUTILS_BUILD -c -o CoinPresolveSingleton.lo CoinPresolveSingleton.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -w -g -O2 -DCOINUTILS_BUILD -c CoinPresolveSingleton.cpp  -fPIC -DPIC -o CoinPresolveSingleton.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`     -w -g -O2   -DCOINUTILS_BUILD -c -o CoinPresolveSubst.lo CoinPresolveSubst.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -w -g -O2 -DCOINUTILS_BUILD -c CoinPresolveSubst.cpp  -fPIC -DPIC -o CoinPresolveSubst.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`     -w -g -O2   -DCOINUTILS_BUILD -c -o CoinPresolveTighten.lo CoinPresolveTighten.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -w -g -O2 -DCOINUTILS_BUILD -c CoinPresolveTighten.cpp  -fPIC -DPIC -o CoinPresolveTighten.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`     -w -g -O2   -DCOINUTILS_BUILD -c -o CoinPresolveTripleton.lo CoinPresolveTripleton.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -w -g -O2 -DCOINUTILS_BUILD -c CoinPresolveTripleton.cpp  -fPIC -DPIC -o CoinPresolveTripleton.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`     -w -g -O2   -DCOINUTILS_BUILD -c -o CoinPresolveUseless.lo CoinPresolveUseless.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -w -g -O2 -DCOINUTILS_BUILD -c CoinPresolveUseless.cpp  -fPIC -DPIC -o CoinPresolveUseless.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`     -w -g -O2   -DCOINUTILS_BUILD -c -o CoinPresolveZeros.lo CoinPresolveZeros.cpp
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/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`     -w -g -O2   -DCOINUTILS_BUILD -c -o CoinRational.lo CoinRational.cpp
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/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`     -w -g -O2   -DCOINUTILS_BUILD -c -o CoinSearchTree.lo CoinSearchTree.cpp
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/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`     -w -g -O2   -DCOINUTILS_BUILD -c -o CoinShallowPackedVector.lo CoinShallowPackedVector.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -w -g -O2 -DCOINUTILS_BUILD -c CoinShallowPackedVector.cpp  -fPIC -DPIC -o CoinShallowPackedVector.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`     -w -g -O2   -DCOINUTILS_BUILD -c -o CoinSnapshot.lo CoinSnapshot.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -w -g -O2 -DCOINUTILS_BUILD -c CoinSnapshot.cpp  -fPIC -DPIC -o CoinSnapshot.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`     -w -g -O2   -DCOINUTILS_BUILD -c -o CoinWarmStartBasis.lo CoinWarmStartBasis.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -w -g -O2 -DCOINUTILS_BUILD -c CoinWarmStartBasis.cpp  -fPIC -DPIC -o CoinWarmStartBasis.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`     -w -g -O2   -DCOINUTILS_BUILD -c -o CoinWarmStartVector.lo CoinWarmStartVector.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -w -g -O2 -DCOINUTILS_BUILD -c CoinWarmStartVector.cpp  -fPIC -DPIC -o CoinWarmStartVector.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`     -w -g -O2   -DCOINUTILS_BUILD -c -o CoinWarmStartDual.lo CoinWarmStartDual.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -w -g -O2 -DCOINUTILS_BUILD -c CoinWarmStartDual.cpp  -fPIC -DPIC -o CoinWarmStartDual.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`     -w -g -O2   -DCOINUTILS_BUILD -c -o CoinWarmStartPrimalDual.lo CoinWarmStartPrimalDual.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -w -g -O2 -DCOINUTILS_BUILD -c CoinWarmStartPrimalDual.cpp  -fPIC -DPIC -o CoinWarmStartPrimalDual.o
/bin/bash ../../libtool --tag=CXX --mode=link g++  -w -g -O2   -DCOINUTILS_BUILD   -o libCoinUtils.la -rpath /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib -no-undefined -version-info 13:6:10 CoinAlloc.lo CoinBuild.lo CoinDenseVector.lo CoinError.lo CoinFactorization1.lo CoinFactorization2.lo CoinFactorization3.lo CoinFactorization4.lo CoinSimpFactorization.lo CoinDenseFactorization.lo CoinOslFactorization.lo CoinOslFactorization2.lo CoinOslFactorization3.lo CoinFileIO.lo CoinFinite.lo CoinIndexedVector.lo CoinLpIO.lo CoinMessage.lo CoinMessageHandler.lo CoinModel.lo CoinStructuredModel.lo CoinModelUseful.lo CoinModelUseful2.lo CoinMpsIO.lo CoinPackedMatrix.lo CoinPackedVector.lo CoinPackedVectorBase.lo CoinParam.lo CoinParamUtils.lo CoinPostsolveMatrix.lo CoinPrePostsolveMatrix.lo CoinPresolveDoubleton.lo CoinPresolveDual.lo CoinPresolveDupcol.lo CoinPresolveEmpty.lo CoinPresolveFixed.lo CoinPresolveForcing.lo CoinPresolveHelperFunctions.lo CoinPresolveImpliedFree.lo CoinPresolveIsolated.lo CoinPresolveMatrix.lo CoinPresolvePsdebug.lo CoinPresolveMonitor.lo CoinPresolveSingleton.lo CoinPresolveSubst.lo CoinPresolveTighten.lo CoinPresolveTripleton.lo CoinPresolveUseless.lo CoinPresolveZeros.lo CoinRational.lo CoinSearchTree.lo CoinShallowPackedVector.lo CoinSnapshot.lo CoinWarmStartBasis.lo CoinWarmStartVector.lo CoinWarmStartDual.lo CoinWarmStartPrimalDual.lo -llapack -lblas -lm  
mkdir .libs
ar cru .libs/libCoinUtils.a  CoinAlloc.o CoinBuild.o CoinDenseVector.o CoinError.o CoinFactorization1.o CoinFactorization2.o CoinFactorization3.o CoinFactorization4.o CoinSimpFactorization.o CoinDenseFactorization.o CoinOslFactorization.o CoinOslFactorization2.o CoinOslFactorization3.o CoinFileIO.o CoinFinite.o CoinIndexedVector.o CoinLpIO.o CoinMessage.o CoinMessageHandler.o CoinModel.o CoinStructuredModel.o CoinModelUseful.o CoinModelUseful2.o CoinMpsIO.o CoinPackedMatrix.o CoinPackedVector.o CoinPackedVectorBase.o CoinParam.o CoinParamUtils.o CoinPostsolveMatrix.o CoinPrePostsolveMatrix.o CoinPresolveDoubleton.o CoinPresolveDual.o CoinPresolveDupcol.o CoinPresolveEmpty.o CoinPresolveFixed.o CoinPresolveForcing.o CoinPresolveHelperFunctions.o CoinPresolveImpliedFree.o CoinPresolveIsolated.o CoinPresolveMatrix.o CoinPresolvePsdebug.o CoinPresolveMonitor.o CoinPresolveSingleton.o CoinPresolveSubst.o CoinPresolveTighten.o CoinPresolveTripleton.o CoinPresolveUseless.o CoinPresolveZeros.o CoinRational.o CoinSearchTree.o CoinShallowPackedVector.o CoinSnapshot.o CoinWarmStartBasis.o CoinWarmStartVector.o CoinWarmStartDual.o CoinWarmStartPrimalDual.o
ar: `u' modifier ignored since `D' is the default (see `U')
ranlib .libs/libCoinUtils.a
creating libCoinUtils.la
(cd .libs && rm -f libCoinUtils.la && ln -s ../libCoinUtils.la libCoinUtils.la)
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Making all in Osi
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Making all in src/Osi
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make  all-am
make[4]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi'
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -w -g -O2   -DOSI_BUILD -c -o OsiAuxInfo.lo OsiAuxInfo.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -w -g -O2 -DOSI_BUILD -c OsiAuxInfo.cpp  -fPIC -DPIC -o OsiAuxInfo.o
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -w -g -O2   -DOSI_BUILD -c -o OsiBranchingObject.lo OsiBranchingObject.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -w -g -O2 -DOSI_BUILD -c OsiBranchingObject.cpp  -fPIC -DPIC -o OsiBranchingObject.o
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -w -g -O2   -DOSI_BUILD -c -o OsiChooseVariable.lo OsiChooseVariable.cpp
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/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -w -g -O2   -DOSI_BUILD -c -o OsiColCut.lo OsiColCut.cpp
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/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -w -g -O2   -DOSI_BUILD -c -o OsiCut.lo OsiCut.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -w -g -O2 -DOSI_BUILD -c OsiCut.cpp  -fPIC -DPIC -o OsiCut.o
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -w -g -O2   -DOSI_BUILD -c -o OsiCuts.lo OsiCuts.cpp
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/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -w -g -O2   -DOSI_BUILD -c -o OsiNames.lo OsiNames.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -w -g -O2 -DOSI_BUILD -c OsiNames.cpp  -fPIC -DPIC -o OsiNames.o
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -w -g -O2   -DOSI_BUILD -c -o OsiPresolve.lo OsiPresolve.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -w -g -O2 -DOSI_BUILD -c OsiPresolve.cpp  -fPIC -DPIC -o OsiPresolve.o
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -w -g -O2   -DOSI_BUILD -c -o OsiRowCut.lo OsiRowCut.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -w -g -O2 -DOSI_BUILD -c OsiRowCut.cpp  -fPIC -DPIC -o OsiRowCut.o
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -w -g -O2   -DOSI_BUILD -c -o OsiRowCutDebugger.lo OsiRowCutDebugger.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -w -g -O2 -DOSI_BUILD -c OsiRowCutDebugger.cpp  -fPIC -DPIC -o OsiRowCutDebugger.o
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -w -g -O2   -DOSI_BUILD -c -o OsiSolverBranch.lo OsiSolverBranch.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -w -g -O2 -DOSI_BUILD -c OsiSolverBranch.cpp  -fPIC -DPIC -o OsiSolverBranch.o
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -w -g -O2   -DOSI_BUILD -c -o OsiSolverInterface.lo OsiSolverInterface.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -w -g -O2 -DOSI_BUILD -c OsiSolverInterface.cpp  -fPIC -DPIC -o OsiSolverInterface.o
/bin/bash ../../../libtool --tag=CXX --mode=link g++  -w -g -O2   -DOSI_BUILD   -o libOsi.la -rpath /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib -no-undefined -version-info 13:4:12 OsiAuxInfo.lo OsiBranchingObject.lo OsiChooseVariable.lo OsiColCut.lo OsiCut.lo OsiCuts.lo OsiNames.lo OsiPresolve.lo OsiRowCut.lo OsiRowCutDebugger.lo OsiSolverBranch.lo OsiSolverInterface.lo /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -llapack -lblas -lm  
mkdir .libs
ar cru .libs/libOsi.a  OsiAuxInfo.o OsiBranchingObject.o OsiChooseVariable.o OsiColCut.o OsiCut.o OsiCuts.o OsiNames.o OsiPresolve.o OsiRowCut.o OsiRowCutDebugger.o OsiSolverBranch.o OsiSolverInterface.o
ar: `u' modifier ignored since `D' is the default (see `U')
ranlib .libs/libOsi.a
creating libOsi.la
(cd .libs && rm -f libOsi.la && ln -s ../libOsi.la libOsi.la)
make[4]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi'
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Making all in src/OsiCommonTest
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/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .` -I../../src/Osi  -I`echo ./../Osi` -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -w -g -O2   -DOSI_BUILD -c -o OsiColCutTest.lo OsiColCutTest.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I../../src/Osi -I./../Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -w -g -O2 -DOSI_BUILD -c OsiColCutTest.cpp  -fPIC -DPIC -o OsiColCutTest.o
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .` -I../../src/Osi  -I`echo ./../Osi` -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -w -g -O2   -DOSI_BUILD -c -o OsiCutsTest.lo OsiCutsTest.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I../../src/Osi -I./../Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -w -g -O2 -DOSI_BUILD -c OsiCutsTest.cpp  -fPIC -DPIC -o OsiCutsTest.o
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .` -I../../src/Osi  -I`echo ./../Osi` -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -w -g -O2   -DOSI_BUILD -c -o OsiRowCutDebuggerTest.lo OsiRowCutDebuggerTest.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I../../src/Osi -I./../Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -w -g -O2 -DOSI_BUILD -c OsiRowCutDebuggerTest.cpp  -fPIC -DPIC -o OsiRowCutDebuggerTest.o
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .` -I../../src/Osi  -I`echo ./../Osi` -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -w -g -O2   -DOSI_BUILD -c -o OsiRowCutTest.lo OsiRowCutTest.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I../../src/Osi -I./../Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -w -g -O2 -DOSI_BUILD -c OsiRowCutTest.cpp  -fPIC -DPIC -o OsiRowCutTest.o
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .` -I../../src/Osi  -I`echo ./../Osi` -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -w -g -O2   -DOSI_BUILD -c -o OsiSimplexAPITest.lo OsiSimplexAPITest.cpp
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 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -w -g -O2 -DCLP_BUILD -c ClpPredictorCorrector.cpp  -fPIC -DPIC -o ClpPredictorCorrector.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -DCOIN_HAS_CLP     -w -g -O2   -DCLP_BUILD -c -o ClpPdco.lo ClpPdco.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -w -g -O2 -DCLP_BUILD -c ClpPdco.cpp  -fPIC -DPIC -o ClpPdco.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -DCOIN_HAS_CLP     -w -g -O2   -DCLP_BUILD -c -o ClpPdcoBase.lo ClpPdcoBase.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -w -g -O2 -DCLP_BUILD -c ClpPdcoBase.cpp  -fPIC -DPIC -o ClpPdcoBase.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -DCOIN_HAS_CLP     -w -g -O2   -DCLP_BUILD -c -o ClpLsqr.lo ClpLsqr.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -w -g -O2 -DCLP_BUILD -c ClpLsqr.cpp  -fPIC -DPIC -o ClpLsqr.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -DCOIN_HAS_CLP     -w -g -O2   -DCLP_BUILD -c -o ClpPresolve.lo ClpPresolve.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -w -g -O2 -DCLP_BUILD -c ClpPresolve.cpp  -fPIC -DPIC -o ClpPresolve.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -DCOIN_HAS_CLP     -w -g -O2   -DCLP_BUILD -c -o ClpPrimalColumnDantzig.lo ClpPrimalColumnDantzig.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -w -g -O2 -DCLP_BUILD -c ClpPrimalColumnDantzig.cpp  -fPIC -DPIC -o ClpPrimalColumnDantzig.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -DCOIN_HAS_CLP     -w -g -O2   -DCLP_BUILD -c -o ClpPrimalColumnPivot.lo ClpPrimalColumnPivot.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -w -g -O2 -DCLP_BUILD -c ClpPrimalColumnPivot.cpp  -fPIC -DPIC -o ClpPrimalColumnPivot.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -DCOIN_HAS_CLP     -w -g -O2   -DCLP_BUILD -c -o ClpPrimalColumnSteepest.lo ClpPrimalColumnSteepest.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -w -g -O2 -DCLP_BUILD -c ClpPrimalColumnSteepest.cpp  -fPIC -DPIC -o ClpPrimalColumnSteepest.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -DCOIN_HAS_CLP     -w -g -O2   -DCLP_BUILD -c -o ClpQuadraticObjective.lo ClpQuadraticObjective.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -w -g -O2 -DCLP_BUILD -c ClpQuadraticObjective.cpp  -fPIC -DPIC -o ClpQuadraticObjective.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -DCOIN_HAS_CLP     -w -g -O2   -DCLP_BUILD -c -o ClpSimplex.lo ClpSimplex.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -w -g -O2 -DCLP_BUILD -c ClpSimplex.cpp  -fPIC -DPIC -o ClpSimplex.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -DCOIN_HAS_CLP     -w -g -O2   -DCLP_BUILD -c -o ClpSimplexDual.lo ClpSimplexDual.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -w -g -O2 -DCLP_BUILD -c ClpSimplexDual.cpp  -fPIC -DPIC -o ClpSimplexDual.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -DCOIN_HAS_CLP     -w -g -O2   -DCLP_BUILD -c -o ClpSimplexNonlinear.lo ClpSimplexNonlinear.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -w -g -O2 -DCLP_BUILD -c ClpSimplexNonlinear.cpp  -fPIC -DPIC -o ClpSimplexNonlinear.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -DCOIN_HAS_CLP     -w -g -O2   -DCLP_BUILD -c -o ClpSimplexOther.lo ClpSimplexOther.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -w -g -O2 -DCLP_BUILD -c ClpSimplexOther.cpp  -fPIC -DPIC -o ClpSimplexOther.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -DCOIN_HAS_CLP     -w -g -O2   -DCLP_BUILD -c -o ClpSimplexPrimal.lo ClpSimplexPrimal.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -w -g -O2 -DCLP_BUILD -c ClpSimplexPrimal.cpp  -fPIC -DPIC -o ClpSimplexPrimal.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -DCOIN_HAS_CLP     -w -g -O2   -DCLP_BUILD -c -o ClpSolve.lo ClpSolve.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -w -g -O2 -DCLP_BUILD -c ClpSolve.cpp  -fPIC -DPIC -o ClpSolve.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -DCOIN_HAS_CLP     -w -g -O2   -DCLP_BUILD -c -o Idiot.lo Idiot.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -w -g -O2 -DCLP_BUILD -c Idiot.cpp  -fPIC -DPIC -o Idiot.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -DCOIN_HAS_CLP     -w -g -O2   -DCLP_BUILD -c -o IdiSolve.lo IdiSolve.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -w -g -O2 -DCLP_BUILD -c IdiSolve.cpp  -fPIC -DPIC -o IdiSolve.o
/bin/bash ../../libtool --tag=CXX --mode=link g++  -w -g -O2   -DCLP_BUILD   -o libClp.la -rpath /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib -no-undefined -version-info 14:6:13 ClpCholeskyBase.lo ClpCholeskyDense.lo ClpConstraint.lo ClpConstraintLinear.lo ClpConstraintQuadratic.lo Clp_C_Interface.lo ClpDualRowDantzig.lo ClpDualRowPivot.lo ClpDualRowSteepest.lo ClpDummyMatrix.lo ClpDynamicExampleMatrix.lo ClpDynamicMatrix.lo ClpEventHandler.lo ClpFactorization.lo ClpGubDynamicMatrix.lo ClpGubMatrix.lo ClpHelperFunctions.lo ClpInterior.lo ClpLinearObjective.lo ClpMatrixBase.lo ClpMessage.lo ClpModel.lo ClpNetworkBasis.lo ClpNetworkMatrix.lo ClpNonLinearCost.lo ClpNode.lo ClpObjective.lo ClpPackedMatrix.lo ClpPlusMinusOneMatrix.lo ClpPredictorCorrector.lo ClpPdco.lo ClpPdcoBase.lo ClpLsqr.lo ClpPresolve.lo ClpPrimalColumnDantzig.lo ClpPrimalColumnPivot.lo ClpPrimalColumnSteepest.lo ClpQuadraticObjective.lo ClpSimplex.lo ClpSimplexDual.lo ClpSimplexNonlinear.lo ClpSimplexOther.lo ClpSimplexPrimal.lo ClpSolve.lo Idiot.lo IdiSolve.lo       /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -llapack -lblas -lm  
mkdir .libs
ar cru .libs/libClp.a  ClpCholeskyBase.o ClpCholeskyDense.o ClpConstraint.o ClpConstraintLinear.o ClpConstraintQuadratic.o Clp_C_Interface.o ClpDualRowDantzig.o ClpDualRowPivot.o ClpDualRowSteepest.o ClpDummyMatrix.o ClpDynamicExampleMatrix.o ClpDynamicMatrix.o ClpEventHandler.o ClpFactorization.o ClpGubDynamicMatrix.o ClpGubMatrix.o ClpHelperFunctions.o ClpInterior.o ClpLinearObjective.o ClpMatrixBase.o ClpMessage.o ClpModel.o ClpNetworkBasis.o ClpNetworkMatrix.o ClpNonLinearCost.o ClpNode.o ClpObjective.o ClpPackedMatrix.o ClpPlusMinusOneMatrix.o ClpPredictorCorrector.o ClpPdco.o ClpPdcoBase.o ClpLsqr.o ClpPresolve.o ClpPrimalColumnDantzig.o ClpPrimalColumnPivot.o ClpPrimalColumnSteepest.o ClpQuadraticObjective.o ClpSimplex.o ClpSimplexDual.o ClpSimplexNonlinear.o ClpSimplexOther.o ClpSimplexPrimal.o ClpSolve.o Idiot.o IdiSolve.o
ar: `u' modifier ignored since `D' is the default (see `U')
ranlib .libs/libClp.a
creating libClp.la
(cd .libs && rm -f libClp.la && ln -s ../libClp.la libClp.la)
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -DCOIN_HAS_CLP     -w -g -O2   -DCLP_BUILD -c -o ClpSolver.lo ClpSolver.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -w -g -O2 -DCLP_BUILD -c ClpSolver.cpp  -fPIC -DPIC -o ClpSolver.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -DCOIN_HAS_CLP     -w -g -O2   -DCLP_BUILD -c -o CbcOrClpParam.lo CbcOrClpParam.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -w -g -O2 -DCLP_BUILD -c CbcOrClpParam.cpp  -fPIC -DPIC -o CbcOrClpParam.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -DCOIN_HAS_CLP     -w -g -O2   -DCLP_BUILD -c -o Clp_ampl.lo Clp_ampl.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -w -g -O2 -DCLP_BUILD -c Clp_ampl.cpp  -fPIC -DPIC -o Clp_ampl.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -DCOIN_HAS_CLP     -w -g -O2   -DCLP_BUILD -c -o MyEventHandler.lo MyEventHandler.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -w -g -O2 -DCLP_BUILD -c MyEventHandler.cpp  -fPIC -DPIC -o MyEventHandler.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -DCOIN_HAS_CLP     -w -g -O2   -DCLP_BUILD -c -o MyMessageHandler.lo MyMessageHandler.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -w -g -O2 -DCLP_BUILD -c MyMessageHandler.cpp  -fPIC -DPIC -o MyMessageHandler.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -DCOIN_HAS_CLP     -w -g -O2   -DCLP_BUILD -c -o unitTest.lo unitTest.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -w -g -O2 -DCLP_BUILD -c unitTest.cpp  -fPIC -DPIC -o unitTest.o
/bin/bash ../../libtool --tag=CXX --mode=link g++  -w -g -O2   -DCLP_BUILD   -o libClpSolver.la -rpath /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib -no-undefined -version-info 14:6:13 ClpSolver.lo CbcOrClpParam.lo Clp_ampl.lo MyEventHandler.lo MyMessageHandler.lo unitTest.lo /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -llapack -lblas -lm  libClp.la 
ar cru .libs/libClpSolver.a  ClpSolver.o CbcOrClpParam.o Clp_ampl.o MyEventHandler.o MyMessageHandler.o unitTest.o
ar: `u' modifier ignored since `D' is the default (see `U')
ranlib .libs/libClpSolver.a
creating libClpSolver.la
(cd .libs && rm -f libClpSolver.la && ln -s ../libClpSolver.la libClpSolver.la)
g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -DCOIN_HAS_CLP     -w -g -O2   -DCLP_BUILD -c -o ClpMain.o ClpMain.cpp
/bin/bash ../../libtool --tag=CXX --mode=link g++  -w -g -O2   -DCLP_BUILD   -o clp  ClpMain.o libClpSolver.la libClp.la /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -llapack -lblas -lm   
g++ -w -g -O2 -DCLP_BUILD -o clp ClpMain.o  ./.libs/libClpSolver.a /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/.libs/libClp.a ./.libs/libClp.a /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src/.libs/libCoinUtils.a -llapack -lblas -lm
make[4]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src'
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Making all in src/OsiClp
make[3]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp'
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -w -g -O2   -DCLP_BUILD -c -o OsiClpSolverInterface.lo OsiClpSolverInterface.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -w -g -O2 -DCLP_BUILD -c OsiClpSolverInterface.cpp  -fPIC -DPIC -o OsiClpSolverInterface.o
/bin/bash ../../../libtool --tag=CXX --mode=link g++  -w -g -O2   -DCLP_BUILD   -o libOsiClp.la -rpath /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib -no-undefined -version-info 14:6:13 OsiClpSolverInterface.lo /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -llapack -lblas -lm  ../libClp.la 
mkdir .libs
ar cru .libs/libOsiClp.a  OsiClpSolverInterface.o
ar: `u' modifier ignored since `D' is the default (see `U')
ranlib .libs/libOsiClp.a
creating libOsiClp.la
(cd .libs && rm -f libOsiClp.la && ln -s ../libOsiClp.la libOsiClp.la)
make[3]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp'
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Making all in Cgl
make[2]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl'
Making all in src
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make  all-recursive
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Making all in CglAllDifferent
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/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -w -g -O2   -DCGL_BUILD -c -o CglAllDifferent.lo CglAllDifferent.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -w -g -O2 -DCGL_BUILD -c CglAllDifferent.cpp  -fPIC -DPIC -o CglAllDifferent.o
/bin/bash ../../../libtool --tag=CXX --mode=link g++  -w -g -O2   -DCGL_BUILD   -o libCglAllDifferent.la  -no-undefined -version-info 10:4:9 CglAllDifferent.lo  
mkdir .libs
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ar cru .libs/libCglAllDifferent.a  CglAllDifferent.o
ar: `u' modifier ignored since `D' is the default (see `U')
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creating libCglAllDifferent.la
(cd .libs && rm -f libCglAllDifferent.la && ln -s ../libCglAllDifferent.la libCglAllDifferent.la)
make[5]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent'
Making all in CglClique
make[5]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique'
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -w -g -O2   -DCGL_BUILD -c -o CglClique.lo CglClique.cpp
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/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -w -g -O2   -DCGL_BUILD -c -o CglCliqueHelper.lo CglCliqueHelper.cpp
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/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -w -g -O2   -DCGL_BUILD -c -o CglCliqueTest.lo CglCliqueTest.cpp
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/bin/bash ../../../libtool --tag=CXX --mode=link g++  -w -g -O2   -DCGL_BUILD   -o libCglClique.la  -no-undefined -version-info 10:4:9 CglClique.lo CglCliqueHelper.lo CglCliqueTest.lo  
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ar cru .libs/libCglClique.a  CglClique.o CglCliqueHelper.o CglCliqueTest.o
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ranlib .libs/libCglClique.a
creating libCglClique.la
(cd .libs && rm -f libCglClique.la && ln -s ../libCglClique.la libCglClique.la)
make[5]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique'
Making all in CglDuplicateRow
make[5]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow'
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -w -g -O2   -DCGL_BUILD -c -o CglDuplicateRow.lo CglDuplicateRow.cpp
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ar cru .libs/libCglDuplicateRow.a  CglDuplicateRow.o
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creating libCglDuplicateRow.la
(cd .libs && rm -f libCglDuplicateRow.la && ln -s ../libCglDuplicateRow.la libCglDuplicateRow.la)
make[5]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow'
Making all in CglFlowCover
make[5]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover'
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -w -g -O2   -DCGL_BUILD -c -o CglFlowCover.lo CglFlowCover.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -w -g -O2 -DCGL_BUILD -c CglFlowCover.cpp  -fPIC -DPIC -o CglFlowCover.o
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -w -g -O2   -DCGL_BUILD -c -o CglFlowCoverTest.lo CglFlowCoverTest.cpp
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/bin/bash ../../../libtool --tag=CXX --mode=link g++  -w -g -O2   -DCGL_BUILD   -o libCglFlowCover.la  -no-undefined -version-info 10:4:9 CglFlowCover.lo CglFlowCoverTest.lo  
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ar cru .libs/libCglFlowCover.a  CglFlowCover.o CglFlowCoverTest.o
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creating libCglFlowCover.la
(cd .libs && rm -f libCglFlowCover.la && ln -s ../libCglFlowCover.la libCglFlowCover.la)
make[5]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover'
Making all in CglGMI
make[5]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI'
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -w -g -O2   -DCGL_BUILD -c -o CglGMI.lo CglGMI.cpp
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/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -w -g -O2   -DCGL_BUILD -c -o CglGMIParam.lo CglGMIParam.cpp
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/bin/bash ../../../libtool --tag=CXX --mode=link g++  -w -g -O2   -DCGL_BUILD   -o libCglGMI.la  -no-undefined -version-info 10:4:9 CglGMI.lo CglGMIParam.lo  
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ar cru .libs/libCglGMI.a  CglGMI.o CglGMIParam.o
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creating libCglGMI.la
(cd .libs && rm -f libCglGMI.la && ln -s ../libCglGMI.la libCglGMI.la)
make[5]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI'
Making all in CglGomory
make[5]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory'
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creating libCglGomory.la
(cd .libs && rm -f libCglGomory.la && ln -s ../libCglGomory.la libCglGomory.la)
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Making all in CglKnapsackCover
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/bin/bash ../../../libtool --tag=CXX --mode=link g++  -w -g -O2   -DCGL_BUILD   -o libCglKnapsackCover.la  -no-undefined -version-info 10:4:9 CglKnapsackCover.lo CglKnapsackCoverTest.lo  
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creating libCglKnapsackCover.la
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Making all in CglLandP
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Making all in CglRedSplit
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/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -w -g -O2   -DCGL_BUILD -c -o CglSimpleRoundingTest.lo CglSimpleRoundingTest.cpp
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/bin/bash ../../../libtool --tag=CXX --mode=link g++  -w -g -O2   -DCGL_BUILD   -o libCglSimpleRounding.la  -no-undefined -version-info 10:4:9 CglSimpleRounding.lo CglSimpleRoundingTest.lo  
mkdir .libs
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ar cru .libs/libCglSimpleRounding.a  CglSimpleRounding.o CglSimpleRoundingTest.o
ar: `u' modifier ignored since `D' is the default (see `U')
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creating libCglSimpleRounding.la
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make[5]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding'
Making all in CglTwomir
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/bin/bash ../../../libtool --tag=CXX --mode=link g++  -w -g -O2   -DCGL_BUILD   -o libCglTwomir.la  -no-undefined -version-info 10:4:9 CglTwomir.lo CglTwomirTest.lo  
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ar cru .libs/libCglTwomir.a  CglTwomir.o CglTwomirTest.o
ar: `u' modifier ignored since `D' is the default (see `U')
ranlib .libs/libCglTwomir.a
creating libCglTwomir.la
(cd .libs && rm -f libCglTwomir.la && ln -s ../libCglTwomir.la libCglTwomir.la)
make[5]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir'
Making all in CglZeroHalf
make[5]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf'
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I`echo ./..` -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -w -g -O2   -DCGL_BUILD -c -o CglZeroHalf.lo CglZeroHalf.cpp
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/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I`echo ./..` -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -w -g -O2   -DCGL_BUILD -c -o Cgl012cut.lo Cgl012cut.cpp
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/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I`echo ./..` -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -w -g -O2   -DCGL_BUILD -c -o CglZeroHalfTest.lo CglZeroHalfTest.cpp
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/bin/bash ../../../libtool --tag=CXX --mode=link g++  -w -g -O2   -DCGL_BUILD   -o libCglZeroHalf.la  -no-undefined -version-info 10:4:9 CglZeroHalf.lo Cgl012cut.lo CglZeroHalfTest.lo  
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ar cru .libs/libCglZeroHalf.a  CglZeroHalf.o Cgl012cut.o CglZeroHalfTest.o
ar: `u' modifier ignored since `D' is the default (see `U')
ranlib .libs/libCglZeroHalf.a
creating libCglZeroHalf.la
(cd .libs && rm -f libCglZeroHalf.la && ln -s ../libCglZeroHalf.la libCglZeroHalf.la)
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/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -w -g -O2   -DCGL_BUILD -c -o CglCutGenerator.lo CglCutGenerator.cpp
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/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -w -g -O2   -DCGL_BUILD -c -o CglMessage.lo CglMessage.cpp
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/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -w -g -O2   -DCGL_BUILD -c -o CglStored.lo CglStored.cpp
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/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -w -g -O2   -DCGL_BUILD -c -o CglParam.lo CglParam.cpp
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/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -w -g -O2   -DCGL_BUILD -c -o CglTreeInfo.lo CglTreeInfo.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -w -g -O2 -DCGL_BUILD -c CglTreeInfo.cpp  -fPIC -DPIC -o CglTreeInfo.o
/bin/bash ../../libtool --tag=CXX --mode=link g++  -w -g -O2   -DCGL_BUILD   -o libCgl.la -rpath /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib -no-undefined -version-info 10:4:9 CglCutGenerator.lo CglMessage.lo CglStored.lo CglParam.lo CglTreeInfo.lo CglAllDifferent/libCglAllDifferent.la CglClique/libCglClique.la CglDuplicateRow/libCglDuplicateRow.la CglFlowCover/libCglFlowCover.la CglGMI/libCglGMI.la CglGomory/libCglGomory.la CglKnapsackCover/libCglKnapsackCover.la CglLandP/libCglLandP.la CglLiftAndProject/libCglLiftAndProject.la CglMixedIntegerRounding/libCglMixedIntegerRounding.la CglMixedIntegerRounding2/libCglMixedIntegerRounding2.la CglOddHole/libCglOddHole.la CglPreProcess/libCglPreProcess.la CglProbing/libCglProbing.la CglRedSplit/libCglRedSplit.la CglRedSplit2/libCglRedSplit2.la CglResidualCapacity/libCglResidualCapacity.la CglSimpleRounding/libCglSimpleRounding.la CglTwomir/libCglTwomir.la CglZeroHalf/libCglZeroHalf.la /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/libOsiClp.la /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/libClpSolver.la /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/libClp.la /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -llapack -lblas -lm /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -llapack -lblas -lm /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -llapack -lblas -lm  
mkdir .libs
rm -fr .libs/libCgl.lax
mkdir .libs/libCgl.lax
rm -fr .libs/libCgl.lax/libCglAllDifferent.a
mkdir .libs/libCgl.lax/libCglAllDifferent.a
(cd .libs/libCgl.lax/libCglAllDifferent.a && ar x /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent/.libs/libCglAllDifferent.a)
rm -fr .libs/libCgl.lax/libCglClique.a
mkdir .libs/libCgl.lax/libCglClique.a
(cd .libs/libCgl.lax/libCglClique.a && ar x /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique/.libs/libCglClique.a)
rm -fr .libs/libCgl.lax/libCglDuplicateRow.a
mkdir .libs/libCgl.lax/libCglDuplicateRow.a
(cd .libs/libCgl.lax/libCglDuplicateRow.a && ar x /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow/.libs/libCglDuplicateRow.a)
rm -fr .libs/libCgl.lax/libCglFlowCover.a
mkdir .libs/libCgl.lax/libCglFlowCover.a
(cd .libs/libCgl.lax/libCglFlowCover.a && ar x /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover/.libs/libCglFlowCover.a)
rm -fr .libs/libCgl.lax/libCglGMI.a
mkdir .libs/libCgl.lax/libCglGMI.a
(cd .libs/libCgl.lax/libCglGMI.a && ar x /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI/.libs/libCglGMI.a)
rm -fr .libs/libCgl.lax/libCglGomory.a
mkdir .libs/libCgl.lax/libCglGomory.a
(cd .libs/libCgl.lax/libCglGomory.a && ar x /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory/.libs/libCglGomory.a)
rm -fr .libs/libCgl.lax/libCglKnapsackCover.a
mkdir .libs/libCgl.lax/libCglKnapsackCover.a
(cd .libs/libCgl.lax/libCglKnapsackCover.a && ar x /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover/.libs/libCglKnapsackCover.a)
rm -fr .libs/libCgl.lax/libCglLandP.a
mkdir .libs/libCgl.lax/libCglLandP.a
(cd .libs/libCgl.lax/libCglLandP.a && ar x /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/.libs/libCglLandP.a)
rm -fr .libs/libCgl.lax/libCglLiftAndProject.a
mkdir .libs/libCgl.lax/libCglLiftAndProject.a
(cd .libs/libCgl.lax/libCglLiftAndProject.a && ar x /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject/.libs/libCglLiftAndProject.a)
rm -fr .libs/libCgl.lax/libCglMixedIntegerRounding.a
mkdir .libs/libCgl.lax/libCglMixedIntegerRounding.a
(cd .libs/libCgl.lax/libCglMixedIntegerRounding.a && ar x /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding/.libs/libCglMixedIntegerRounding.a)
rm -fr .libs/libCgl.lax/libCglMixedIntegerRounding2.a
mkdir .libs/libCgl.lax/libCglMixedIntegerRounding2.a
(cd .libs/libCgl.lax/libCglMixedIntegerRounding2.a && ar x /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2/.libs/libCglMixedIntegerRounding2.a)
rm -fr .libs/libCgl.lax/libCglOddHole.a
mkdir .libs/libCgl.lax/libCglOddHole.a
(cd .libs/libCgl.lax/libCglOddHole.a && ar x /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole/.libs/libCglOddHole.a)
rm -fr .libs/libCgl.lax/libCglPreProcess.a
mkdir .libs/libCgl.lax/libCglPreProcess.a
(cd .libs/libCgl.lax/libCglPreProcess.a && ar x /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess/.libs/libCglPreProcess.a)
rm -fr .libs/libCgl.lax/libCglProbing.a
mkdir .libs/libCgl.lax/libCglProbing.a
(cd .libs/libCgl.lax/libCglProbing.a && ar x /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing/.libs/libCglProbing.a)
rm -fr .libs/libCgl.lax/libCglRedSplit.a
mkdir .libs/libCgl.lax/libCglRedSplit.a
(cd .libs/libCgl.lax/libCglRedSplit.a && ar x /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit/.libs/libCglRedSplit.a)
rm -fr .libs/libCgl.lax/libCglRedSplit2.a
mkdir .libs/libCgl.lax/libCglRedSplit2.a
(cd .libs/libCgl.lax/libCglRedSplit2.a && ar x /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2/.libs/libCglRedSplit2.a)
rm -fr .libs/libCgl.lax/libCglResidualCapacity.a
mkdir .libs/libCgl.lax/libCglResidualCapacity.a
(cd .libs/libCgl.lax/libCglResidualCapacity.a && ar x /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity/.libs/libCglResidualCapacity.a)
rm -fr .libs/libCgl.lax/libCglSimpleRounding.a
mkdir .libs/libCgl.lax/libCglSimpleRounding.a
(cd .libs/libCgl.lax/libCglSimpleRounding.a && ar x /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding/.libs/libCglSimpleRounding.a)
rm -fr .libs/libCgl.lax/libCglTwomir.a
mkdir .libs/libCgl.lax/libCglTwomir.a
(cd .libs/libCgl.lax/libCglTwomir.a && ar x /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir/.libs/libCglTwomir.a)
rm -fr .libs/libCgl.lax/libCglZeroHalf.a
mkdir .libs/libCgl.lax/libCglZeroHalf.a
(cd .libs/libCgl.lax/libCglZeroHalf.a && ar x /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf/.libs/libCglZeroHalf.a)
ar cru .libs/libCgl.a  CglCutGenerator.o CglMessage.o CglStored.o CglParam.o CglTreeInfo.o  .libs/libCgl.lax/libCglAllDifferent.a/CglAllDifferent.o  .libs/libCgl.lax/libCglClique.a/CglClique.o .libs/libCgl.lax/libCglClique.a/CglCliqueHelper.o .libs/libCgl.lax/libCglClique.a/CglCliqueTest.o  .libs/libCgl.lax/libCglDuplicateRow.a/CglDuplicateRow.o  .libs/libCgl.lax/libCglFlowCover.a/CglFlowCover.o .libs/libCgl.lax/libCglFlowCover.a/CglFlowCoverTest.o  .libs/libCgl.lax/libCglGMI.a/CglGMI.o .libs/libCgl.lax/libCglGMI.a/CglGMIParam.o  .libs/libCgl.lax/libCglGomory.a/CglGomoryTest.o .libs/libCgl.lax/libCglGomory.a/CglGomory.o  .libs/libCgl.lax/libCglKnapsackCover.a/CglKnapsackCoverTest.o .libs/libCgl.lax/libCglKnapsackCover.a/CglKnapsackCover.o  .libs/libCgl.lax/libCglLandP.a/CglLandPMessages.o .libs/libCgl.lax/libCglLandP.a/CglLandPValidator.o .libs/libCgl.lax/libCglLandP.a/CglLandP.o .libs/libCgl.lax/libCglLandP.a/CglLandPSimplex.o .libs/libCgl.lax/libCglLandP.a/CglLandPTest.o .libs/libCgl.lax/libCglLandP.a/CglLandPTabRow.o .libs/libCgl.lax/libCglLandP.a/CglLandPUtils.o  .libs/libCgl.lax/libCglLiftAndProject.a/CglLiftAndProject.o  .libs/libCgl.lax/libCglMixedIntegerRounding.a/CglMixedIntegerRoundingTest.o .libs/libCgl.lax/libCglMixedIntegerRounding.a/CglMixedIntegerRounding.o  .libs/libCgl.lax/libCglMixedIntegerRounding2.a/CglMixedIntegerRounding2.o .libs/libCgl.lax/libCglMixedIntegerRounding2.a/CglMixedIntegerRounding2Test.o  .libs/libCgl.lax/libCglOddHole.a/CglOddHoleTest.o .libs/libCgl.lax/libCglOddHole.a/CglOddHole.o  .libs/libCgl.lax/libCglPreProcess.a/CglPreProcess.o  .libs/libCgl.lax/libCglProbing.a/CglProbingTest.o .libs/libCgl.lax/libCglProbing.a/CglProbing.o  .libs/libCgl.lax/libCglRedSplit.a/CglRedSplitParam.o .libs/libCgl.lax/libCglRedSplit.a/CglRedSplitTest.o .libs/libCgl.lax/libCglRedSplit.a/CglRedSplit.o  .libs/libCgl.lax/libCglRedSplit2.a/CglRedSplit2.o .libs/libCgl.lax/libCglRedSplit2.a/CglRedSplit2Test.o .libs/libCgl.lax/libCglRedSplit2.a/CglRedSplit2Param.o  .libs/libCgl.lax/libCglResidualCapacity.a/CglResidualCapacity.o .libs/libCgl.lax/libCglResidualCapacity.a/CglResidualCapacityTest.o  .libs/libCgl.lax/libCglSimpleRounding.a/CglSimpleRounding.o .libs/libCgl.lax/libCglSimpleRounding.a/CglSimpleRoundingTest.o  .libs/libCgl.lax/libCglTwomir.a/CglTwomir.o .libs/libCgl.lax/libCglTwomir.a/CglTwomirTest.o  .libs/libCgl.lax/libCglZeroHalf.a/CglZeroHalfTest.o .libs/libCgl.lax/libCglZeroHalf.a/Cgl012cut.o .libs/libCgl.lax/libCglZeroHalf.a/CglZeroHalf.o 
ar: `u' modifier ignored since `D' is the default (see `U')
ranlib .libs/libCgl.a
rm -fr .libs/libCgl.lax
creating libCgl.la
(cd .libs && rm -f libCgl.la && ln -s ../libCgl.la libCgl.la)
make[5]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src'
make[4]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src'
make[3]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src'
make[3]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl'
make[3]: Nothing to be done for 'all-am'.
make[3]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl'
make[2]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl'
Making all in SYMPHONY
make[2]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/SYMPHONY'
Making all in src
make[3]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/SYMPHONY/src'
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -w -g -O2   -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-master.lo `test -f 'Master/master.c' || echo './'`Master/master.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -w -g -O2 -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c Master/master.c  -fPIC -DPIC -o libSym_la-master.o
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -w -g -O2   -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-master_wrapper.lo `test -f 'Master/master_wrapper.c' || echo './'`Master/master_wrapper.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -w -g -O2 -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c Master/master_wrapper.c  -fPIC -DPIC -o libSym_la-master_wrapper.o
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -w -g -O2   -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-master_io.lo `test -f 'Master/master_io.c' || echo './'`Master/master_io.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -w -g -O2 -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c Master/master_io.c  -fPIC -DPIC -o libSym_la-master_io.o
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -w -g -O2   -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-master_func.lo `test -f 'Master/master_func.c' || echo './'`Master/master_func.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -w -g -O2 -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c Master/master_func.c  -fPIC -DPIC -o libSym_la-master_func.o
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -w -g -O2   -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-master_prep.lo `test -f 'Master/master_prep.c' || echo './'`Master/master_prep.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -w -g -O2 -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c Master/master_prep.c  -fPIC -DPIC -o libSym_la-master_prep.o
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -w -g -O2   -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-master_prep_base.lo `test -f 'Master/master_prep_base.c' || echo './'`Master/master_prep_base.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -w -g -O2 -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c Master/master_prep_base.c  -fPIC -DPIC -o libSym_la-master_prep_base.o
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -w -g -O2   -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-master_prep_sr.lo `test -f 'Master/master_prep_sr.c' || echo './'`Master/master_prep_sr.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -w -g -O2 -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c Master/master_prep_sr.c  -fPIC -DPIC -o libSym_la-master_prep_sr.o
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -w -g -O2   -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-tm_func.lo `test -f 'TreeManager/tm_func.c' || echo './'`TreeManager/tm_func.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -w -g -O2 -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c TreeManager/tm_func.c  -fPIC -DPIC -o libSym_la-tm_func.o
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -w -g -O2   -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-tm_proccomm.lo `test -f 'TreeManager/tm_proccomm.c' || echo './'`TreeManager/tm_proccomm.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -w -g -O2 -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c TreeManager/tm_proccomm.c  -fPIC -DPIC -o libSym_la-tm_proccomm.o
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -w -g -O2   -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-lp_solver.lo `test -f 'LP/lp_solver.c' || echo './'`LP/lp_solver.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -w -g -O2 -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c LP/lp_solver.c  -fPIC -DPIC -o libSym_la-lp_solver.o
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -w -g -O2   -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-lp_varfunc.lo `test -f 'LP/lp_varfunc.c' || echo './'`LP/lp_varfunc.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -w -g -O2 -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c LP/lp_varfunc.c  -fPIC -DPIC -o libSym_la-lp_varfunc.o
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -w -g -O2   -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-lp_rowfunc.lo `test -f 'LP/lp_rowfunc.c' || echo './'`LP/lp_rowfunc.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -w -g -O2 -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c LP/lp_rowfunc.c  -fPIC -DPIC -o libSym_la-lp_rowfunc.o
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -w -g -O2   -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-lp_genfunc.lo `test -f 'LP/lp_genfunc.c' || echo './'`LP/lp_genfunc.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -w -g -O2 -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c LP/lp_genfunc.c  -fPIC -DPIC -o libSym_la-lp_genfunc.o
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -w -g -O2   -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-lp_proccomm.lo `test -f 'LP/lp_proccomm.c' || echo './'`LP/lp_proccomm.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -w -g -O2 -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c LP/lp_proccomm.c  -fPIC -DPIC -o libSym_la-lp_proccomm.o
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -w -g -O2   -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-lp_wrapper.lo `test -f 'LP/lp_wrapper.c' || echo './'`LP/lp_wrapper.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -w -g -O2 -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c LP/lp_wrapper.c  -fPIC -DPIC -o libSym_la-lp_wrapper.o
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -w -g -O2   -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-lp_free.lo `test -f 'LP/lp_free.c' || echo './'`LP/lp_free.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -w -g -O2 -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c LP/lp_free.c  -fPIC -DPIC -o libSym_la-lp_free.o
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -w -g -O2   -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-lp_sp.lo `test -f 'LP/lp_sp.c' || echo './'`LP/lp_sp.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -w -g -O2 -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c LP/lp_sp.c  -fPIC -DPIC -o libSym_la-lp_sp.o
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -w -g -O2   -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-lp_heuristics.lo `test -f 'LP/lp_heuristics.c' || echo './'`LP/lp_heuristics.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -w -g -O2 -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c LP/lp_heuristics.c  -fPIC -DPIC -o libSym_la-lp_heuristics.o
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -w -g -O2   -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-lp_branch.lo `test -f 'LP/lp_branch.c' || echo './'`LP/lp_branch.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -w -g -O2 -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c LP/lp_branch.c  -fPIC -DPIC -o libSym_la-lp_branch.o
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -w -g -O2   -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-cg_func.lo `test -f 'CutGen/cg_func.c' || echo './'`CutGen/cg_func.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -w -g -O2 -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c CutGen/cg_func.c  -fPIC -DPIC -o libSym_la-cg_func.o
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -w -g -O2   -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-cg_wrapper.lo `test -f 'CutGen/cg_wrapper.c' || echo './'`CutGen/cg_wrapper.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -w -g -O2 -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c CutGen/cg_wrapper.c  -fPIC -DPIC -o libSym_la-cg_wrapper.o
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -w -g -O2   -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-cp_proccomm.lo `test -f 'CutPool/cp_proccomm.c' || echo './'`CutPool/cp_proccomm.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -w -g -O2 -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c CutPool/cp_proccomm.c  -fPIC -DPIC -o libSym_la-cp_proccomm.o
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -w -g -O2   -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-cp_func.lo `test -f 'CutPool/cp_func.c' || echo './'`CutPool/cp_func.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -w -g -O2 -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c CutPool/cp_func.c  -fPIC -DPIC -o libSym_la-cp_func.o
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -w -g -O2   -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-cp_wrapper.lo `test -f 'CutPool/cp_wrapper.c' || echo './'`CutPool/cp_wrapper.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -w -g -O2 -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c CutPool/cp_wrapper.c  -fPIC -DPIC -o libSym_la-cp_wrapper.o
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -w -g -O2   -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-timemeas.lo `test -f 'Common/timemeas.c' || echo './'`Common/timemeas.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -w -g -O2 -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c Common/timemeas.c  -fPIC -DPIC -o libSym_la-timemeas.o
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -w -g -O2   -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-sym_qsort.lo `test -f 'Common/sym_qsort.c' || echo './'`Common/sym_qsort.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -w -g -O2 -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c Common/sym_qsort.c  -fPIC -DPIC -o libSym_la-sym_qsort.o
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -w -g -O2   -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-proccomm.lo `test -f 'Common/proccomm.c' || echo './'`Common/proccomm.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -w -g -O2 -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c Common/proccomm.c  -fPIC -DPIC -o libSym_la-proccomm.o
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -w -g -O2   -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-pack_cut.lo `test -f 'Common/pack_cut.c' || echo './'`Common/pack_cut.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -w -g -O2 -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c Common/pack_cut.c  -fPIC -DPIC -o libSym_la-pack_cut.o
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -w -g -O2   -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-pack_array.lo `test -f 'Common/pack_array.c' || echo './'`Common/pack_array.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -w -g -O2 -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c Common/pack_array.c  -fPIC -DPIC -o libSym_la-pack_array.o
/bin/bash ../../libtool --tag=CXX --mode=link g++  -w -g -O2   -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual   -o libSym.la -rpath /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib  -no-undefined -version-info 9:10:6  libSym_la-master.lo libSym_la-master_wrapper.lo libSym_la-master_io.lo libSym_la-master_func.lo libSym_la-master_prep.lo libSym_la-master_prep_base.lo libSym_la-master_prep_sr.lo libSym_la-tm_func.lo libSym_la-tm_proccomm.lo libSym_la-lp_solver.lo libSym_la-lp_varfunc.lo libSym_la-lp_rowfunc.lo libSym_la-lp_genfunc.lo libSym_la-lp_proccomm.lo libSym_la-lp_wrapper.lo libSym_la-lp_free.lo libSym_la-lp_sp.lo libSym_la-lp_heuristics.lo  libSym_la-lp_branch.lo libSym_la-cg_func.lo libSym_la-cg_wrapper.lo libSym_la-cp_proccomm.lo libSym_la-cp_func.lo libSym_la-cp_wrapper.lo libSym_la-timemeas.lo libSym_la-sym_qsort.lo libSym_la-proccomm.lo libSym_la-pack_cut.lo libSym_la-pack_array.lo /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/libCgl.la /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/libOsiClp.la /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/libClpSolver.la /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/libClp.la /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -llapack -lblas -lm /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/libOsiClp.la /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/libClpSolver.la /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/libClp.la /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -llapack -lblas -lm /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -llapack -lblas -lm   
mkdir .libs
ar cru .libs/libSym.a  libSym_la-master.o libSym_la-master_wrapper.o libSym_la-master_io.o libSym_la-master_func.o libSym_la-master_prep.o libSym_la-master_prep_base.o libSym_la-master_prep_sr.o libSym_la-tm_func.o libSym_la-tm_proccomm.o libSym_la-lp_solver.o libSym_la-lp_varfunc.o libSym_la-lp_rowfunc.o libSym_la-lp_genfunc.o libSym_la-lp_proccomm.o libSym_la-lp_wrapper.o libSym_la-lp_free.o libSym_la-lp_sp.o libSym_la-lp_heuristics.o libSym_la-lp_branch.o libSym_la-cg_func.o libSym_la-cg_wrapper.o libSym_la-cp_proccomm.o libSym_la-cp_func.o libSym_la-cp_wrapper.o libSym_la-timemeas.o libSym_la-sym_qsort.o libSym_la-proccomm.o libSym_la-pack_cut.o libSym_la-pack_array.o
ar: `u' modifier ignored since `D' is the default (see `U')
ranlib .libs/libSym.a
creating libSym.la
(cd .libs && rm -f libSym.la && ln -s ../libSym.la libSym.la)
g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -w -g -O2   -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o symphony-main.o `test -f 'Master/main.c' || echo './'`Master/main.c
/bin/bash ../../libtool --tag=CXX --mode=link g++  -w -g -O2   -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual   -o symphony -rpath /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib  symphony-main.o libSym.la /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/libCgl.la /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/libOsiClp.la /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/libClpSolver.la /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/libClp.la /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -llapack -lblas -lm /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/libOsiClp.la /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/libClpSolver.la /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/libClp.la /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -llapack -lblas -lm /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -llapack -lblas -lm   
g++ -w -g -O2 -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -o symphony symphony-main.o  ./.libs/libSym.a /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/.libs/libCgl.a /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/.libs/libOsiClp.a /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/.libs/libClpSolver.a /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/.libs/libClp.a /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi/.libs/libOsi.a /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src/.libs/libCoinUtils.a -llapack -lblas -lm -Wl,--rpath -Wl,/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib
make[3]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/SYMPHONY/src'
Making all in src/OsiSym
make[3]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/SYMPHONY/src/OsiSym'
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .` -I../../inc  -I`echo ./../../include` -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -w -g -O2   -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o OsiSymSolverInterface.lo OsiSymSolverInterface.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I../../inc -I./../../include -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -w -g -O2 -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c OsiSymSolverInterface.cpp  -fPIC -DPIC -o OsiSymSolverInterface.o
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .` -I../../inc  -I`echo ./../../include` -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -w -g -O2   -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o SymWarmStart.lo SymWarmStart.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I../../inc -I./../../include -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -w -g -O2 -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c SymWarmStart.cpp  -fPIC -DPIC -o SymWarmStart.o
/bin/bash ../../../libtool --tag=CXX --mode=link g++  -w -g -O2   -DSYMPHONY_BUILD -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual   -o libOsiSym.la -rpath /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib -no-undefined -version-info 9:10:6 OsiSymSolverInterface.lo SymWarmStart.lo /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/libCgl.la /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/libOsiClp.la /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/libClpSolver.la /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/libClp.la /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -llapack -lblas -lm /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/libOsiClp.la /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/libClpSolver.la /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/libClp.la /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -llapack -lblas -lm /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -llapack -lblas -lm  ../libSym.la 
mkdir .libs
ar cru .libs/libOsiSym.a  OsiSymSolverInterface.o SymWarmStart.o
ar: `u' modifier ignored since `D' is the default (see `U')
ranlib .libs/libOsiSym.a
creating libOsiSym.la
(cd .libs && rm -f libOsiSym.la && ln -s ../libOsiSym.la libOsiSym.la)
make[3]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/SYMPHONY/src/OsiSym'
make[3]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/SYMPHONY'
make[3]: Nothing to be done for 'all-am'.
make[3]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/SYMPHONY'
make[2]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/SYMPHONY'
make[2]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY'
make[2]: Nothing to be done for 'all-am'.
make[2]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY'
make[1]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY'
make[1]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY'
Making install in CoinUtils
make[2]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils'
Making install in src
make[3]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src'
make[4]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src'
/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/install-sh -c -m 644 config_coinutils.h /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinUtilsConfig.h
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib"
 /bin/bash ../../libtool --mode=install /usr/bin/install -c  'libCoinUtils.la' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libCoinUtils.la'
/usr/bin/install -c .libs/libCoinUtils.lai /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libCoinUtils.la
/usr/bin/install -c .libs/libCoinUtils.a /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libCoinUtils.a
chmod 644 /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libCoinUtils.a
ranlib /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libCoinUtils.a
PATH="$PATH:/sbin" ldconfig -n /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib
----------------------------------------------------------------------
Libraries have been installed in:
   /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'Coin_C_defines.h' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/Coin_C_defines.h'
 /usr/bin/install -c -m 644 'CoinAlloc.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinAlloc.hpp'
 /usr/bin/install -c -m 644 'CoinBuild.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinBuild.hpp'
 /usr/bin/install -c -m 644 'CoinDenseVector.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinDenseVector.hpp'
 /usr/bin/install -c -m 644 'CoinDistance.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinDistance.hpp'
 /usr/bin/install -c -m 644 'CoinError.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinError.hpp'
 /usr/bin/install -c -m 644 'CoinFactorization.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinFactorization.hpp'
 /usr/bin/install -c -m 644 'CoinSimpFactorization.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinSimpFactorization.hpp'
 /usr/bin/install -c -m 644 'CoinDenseFactorization.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinDenseFactorization.hpp'
 /usr/bin/install -c -m 644 'CoinOslFactorization.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinOslFactorization.hpp'
 /usr/bin/install -c -m 644 'CoinFileIO.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinFileIO.hpp'
 /usr/bin/install -c -m 644 'CoinFinite.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinFinite.hpp'
 /usr/bin/install -c -m 644 'CoinFloatEqual.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinFloatEqual.hpp'
 /usr/bin/install -c -m 644 'CoinHelperFunctions.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinHelperFunctions.hpp'
 /usr/bin/install -c -m 644 'CoinIndexedVector.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinIndexedVector.hpp'
 /usr/bin/install -c -m 644 'CoinLpIO.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinLpIO.hpp'
 /usr/bin/install -c -m 644 'CoinMessage.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinMessage.hpp'
 /usr/bin/install -c -m 644 'CoinMessageHandler.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinMessageHandler.hpp'
 /usr/bin/install -c -m 644 'CoinModel.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinModel.hpp'
 /usr/bin/install -c -m 644 'CoinStructuredModel.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinStructuredModel.hpp'
 /usr/bin/install -c -m 644 'CoinModelUseful.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinModelUseful.hpp'
 /usr/bin/install -c -m 644 'CoinMpsIO.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinMpsIO.hpp'
 /usr/bin/install -c -m 644 'CoinPackedMatrix.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinPackedMatrix.hpp'
 /usr/bin/install -c -m 644 'CoinPackedVector.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinPackedVector.hpp'
 /usr/bin/install -c -m 644 'CoinPackedVectorBase.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinPackedVectorBase.hpp'
 /usr/bin/install -c -m 644 'CoinParam.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinParam.hpp'
 /usr/bin/install -c -m 644 'CoinPragma.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinPragma.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveDoubleton.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveDoubleton.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveDual.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveDual.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveDupcol.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveDupcol.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveEmpty.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveEmpty.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveFixed.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveFixed.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveForcing.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveForcing.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveImpliedFree.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveImpliedFree.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveIsolated.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveIsolated.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveMatrix.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveMatrix.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveMonitor.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveMonitor.hpp'
 /usr/bin/install -c -m 644 'CoinPresolvePsdebug.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinPresolvePsdebug.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveSingleton.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveSingleton.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveSubst.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveSubst.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveTighten.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveTighten.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveTripleton.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveTripleton.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveUseless.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveUseless.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveZeros.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveZeros.hpp'
 /usr/bin/install -c -m 644 'CoinRational.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinRational.hpp'
 /usr/bin/install -c -m 644 'CoinSearchTree.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinSearchTree.hpp'
 /usr/bin/install -c -m 644 'CoinShallowPackedVector.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinShallowPackedVector.hpp'
 /usr/bin/install -c -m 644 'CoinSignal.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinSignal.hpp'
 /usr/bin/install -c -m 644 'CoinSmartPtr.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinSmartPtr.hpp'
 /usr/bin/install -c -m 644 'CoinSnapshot.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinSnapshot.hpp'
 /usr/bin/install -c -m 644 'CoinSort.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinSort.hpp'
 /usr/bin/install -c -m 644 'CoinTime.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinTime.hpp'
 /usr/bin/install -c -m 644 'CoinTypes.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinTypes.hpp'
 /usr/bin/install -c -m 644 'CoinUtility.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinUtility.hpp'
 /usr/bin/install -c -m 644 'CoinWarmStart.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinWarmStart.hpp'
 /usr/bin/install -c -m 644 'CoinWarmStartBasis.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinWarmStartBasis.hpp'
 /usr/bin/install -c -m 644 'CoinWarmStartVector.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinWarmStartVector.hpp'
 /usr/bin/install -c -m 644 'CoinWarmStartDual.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinWarmStartDual.hpp'
 /usr/bin/install -c -m 644 'CoinWarmStartPrimalDual.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinWarmStartPrimalDual.hpp'
make[4]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src'
make[3]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src'
make[3]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils'
make[4]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils'
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/share/coin/doc/CoinUtils" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/share/coin/doc/CoinUtils"
for file in README AUTHORS LICENSE ; do \
  if test -f "$file"; then dir=; else dir="./"; fi; \
  if test -f "$dir$file"; then /usr/bin/install -c -m 644 "$dir$file" "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/share/coin/doc/CoinUtils/$file"; fi; \
done 
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig"
 /usr/bin/install -c -m 644 'coinutils.pc' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig/coinutils.pc'
make  install-data-hook
make[5]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils'
PKG_CONFIG_PATH=/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib64/pkgconfig:/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig:/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/share/pkgconfig::/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig \
"pkg-config" --libs coinutils > /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/share/coin/doc/CoinUtils/coinutils_addlibs.txt
make[5]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils'
make[4]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils'
make[3]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils'
make[2]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils'
Making install in Osi
make[2]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi'
Making install in src/Osi
make[3]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi'
make[4]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi'
/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/install-sh -c -m 644 config_osi.h /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/OsiConfig.h
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib"
 /bin/bash ../../../libtool --mode=install /usr/bin/install -c  'libOsi.la' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libOsi.la'
/usr/bin/install -c .libs/libOsi.lai /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libOsi.la
/usr/bin/install -c .libs/libOsi.a /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libOsi.a
chmod 644 /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libOsi.a
ranlib /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libOsi.a
PATH="$PATH:/sbin" ldconfig -n /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib
----------------------------------------------------------------------
Libraries have been installed in:
   /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'OsiAuxInfo.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/OsiAuxInfo.hpp'
 /usr/bin/install -c -m 644 'OsiBranchingObject.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/OsiBranchingObject.hpp'
 /usr/bin/install -c -m 644 'OsiChooseVariable.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/OsiChooseVariable.hpp'
 /usr/bin/install -c -m 644 'OsiColCut.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/OsiColCut.hpp'
 /usr/bin/install -c -m 644 'OsiCollections.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/OsiCollections.hpp'
 /usr/bin/install -c -m 644 'OsiCut.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/OsiCut.hpp'
 /usr/bin/install -c -m 644 'OsiCuts.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/OsiCuts.hpp'
 /usr/bin/install -c -m 644 'OsiPresolve.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/OsiPresolve.hpp'
 /usr/bin/install -c -m 644 'OsiRowCut.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/OsiRowCut.hpp'
 /usr/bin/install -c -m 644 'OsiRowCutDebugger.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/OsiRowCutDebugger.hpp'
 /usr/bin/install -c -m 644 'OsiSolverBranch.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/OsiSolverBranch.hpp'
 /usr/bin/install -c -m 644 'OsiSolverInterface.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/OsiSolverInterface.hpp'
 /usr/bin/install -c -m 644 'OsiSolverParameters.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/OsiSolverParameters.hpp'
make[4]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi'
make[3]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi'
Making install in src/OsiCommonTest
make[3]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/OsiCommonTest'
make[4]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/OsiCommonTest'
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib"
 /bin/bash ../../../libtool --mode=install /usr/bin/install -c  'libOsiCommonTests.la' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libOsiCommonTests.la'
/usr/bin/install -c .libs/libOsiCommonTests.lai /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libOsiCommonTests.la
/usr/bin/install -c .libs/libOsiCommonTests.a /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libOsiCommonTests.a
chmod 644 /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libOsiCommonTests.a
ranlib /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libOsiCommonTests.a
PATH="$PATH:/sbin" ldconfig -n /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib
----------------------------------------------------------------------
Libraries have been installed in:
   /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'OsiUnitTests.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/OsiUnitTests.hpp'
make[4]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/OsiCommonTest'
make[3]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/OsiCommonTest'
make[3]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi'
make[4]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi'
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/share/coin/doc/Osi" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/share/coin/doc/Osi"
for file in README AUTHORS LICENSE ; do \
  if test -f "$file"; then dir=; else dir="./"; fi; \
  if test -f "$dir$file"; then /usr/bin/install -c -m 644 "$dir$file" "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/share/coin/doc/Osi/$file"; fi; \
done 
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig"
 /usr/bin/install -c -m 644 'osi.pc' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig/osi.pc'
 /usr/bin/install -c -m 644 'osi-unittests.pc' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig/osi-unittests.pc'
make  install-data-hook
make[5]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi'
PKG_CONFIG_PATH=/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib64/pkgconfig:/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig:/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/share/pkgconfig::/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig \
pkg-config --libs osi > /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/share/coin/doc/Osi/osi_addlibs.txt
make[5]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi'
make[4]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi'
make[3]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi'
make[2]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Osi'
Making install in Clp
make[2]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp'
Making install in src
make[3]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src'
make[4]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src'
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib"
 /bin/bash ../../libtool --mode=install /usr/bin/install -c  'libClp.la' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libClp.la'
/usr/bin/install -c .libs/libClp.lai /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libClp.la
/usr/bin/install -c .libs/libClp.a /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libClp.a
chmod 644 /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libClp.a
ranlib /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libClp.a
PATH="$PATH:/sbin" ldconfig -n /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib
----------------------------------------------------------------------
Libraries have been installed in:
   /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
 /bin/bash ../../libtool --mode=install /usr/bin/install -c  'libClpSolver.la' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libClpSolver.la'
/usr/bin/install -c .libs/libClpSolver.lai /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libClpSolver.la
/usr/bin/install -c .libs/libClpSolver.a /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libClpSolver.a
chmod 644 /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libClpSolver.a
ranlib /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libClpSolver.a
PATH="$PATH:/sbin" ldconfig -n /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib
----------------------------------------------------------------------
Libraries have been installed in:
   /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/bin" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/bin"
  /bin/bash ../../libtool --mode=install /usr/bin/install -c 'clp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/bin/clp'
/usr/bin/install -c clp /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/bin/clp
/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/install-sh -c -m 644 config_clp.h /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpConfig.h
make  install-exec-hook
make[5]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src'
make[5]: Nothing to be done for 'install-exec-hook'.
make[5]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src'
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'Clp_C_Interface.h' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/Clp_C_Interface.h'
 /usr/bin/install -c -m 644 'ClpCholeskyBase.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpCholeskyBase.hpp'
 /usr/bin/install -c -m 644 'ClpCholeskyDense.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpCholeskyDense.hpp'
 /usr/bin/install -c -m 644 'ClpConstraint.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpConstraint.hpp'
 /usr/bin/install -c -m 644 'ClpConstraintLinear.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpConstraintLinear.hpp'
 /usr/bin/install -c -m 644 'ClpConstraintQuadratic.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpConstraintQuadratic.hpp'
 /usr/bin/install -c -m 644 'ClpDualRowDantzig.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpDualRowDantzig.hpp'
 /usr/bin/install -c -m 644 'ClpDualRowPivot.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpDualRowPivot.hpp'
 /usr/bin/install -c -m 644 'ClpDualRowSteepest.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpDualRowSteepest.hpp'
 /usr/bin/install -c -m 644 'ClpDummyMatrix.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpDummyMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpDynamicExampleMatrix.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpDynamicExampleMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpDynamicMatrix.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpDynamicMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpEventHandler.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpEventHandler.hpp'
 /usr/bin/install -c -m 644 'ClpFactorization.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpFactorization.hpp'
 /usr/bin/install -c -m 644 'ClpGubDynamicMatrix.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpGubDynamicMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpGubMatrix.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpGubMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpInterior.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpInterior.hpp'
 /usr/bin/install -c -m 644 'ClpLinearObjective.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpLinearObjective.hpp'
 /usr/bin/install -c -m 644 'ClpMatrixBase.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpMatrixBase.hpp'
 /usr/bin/install -c -m 644 'ClpMessage.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpMessage.hpp'
 /usr/bin/install -c -m 644 'ClpModel.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpModel.hpp'
 /usr/bin/install -c -m 644 'ClpNetworkMatrix.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpNetworkMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpNonLinearCost.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpNonLinearCost.hpp'
 /usr/bin/install -c -m 644 'ClpNode.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpNode.hpp'
 /usr/bin/install -c -m 644 'ClpObjective.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpObjective.hpp'
 /usr/bin/install -c -m 644 'ClpPackedMatrix.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpPackedMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpPdcoBase.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpPdcoBase.hpp'
 /usr/bin/install -c -m 644 'ClpPlusMinusOneMatrix.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpPlusMinusOneMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpParameters.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpParameters.hpp'
 /usr/bin/install -c -m 644 'ClpPresolve.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpPresolve.hpp'
 /usr/bin/install -c -m 644 'ClpPrimalColumnDantzig.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpPrimalColumnDantzig.hpp'
 /usr/bin/install -c -m 644 'ClpPrimalColumnPivot.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpPrimalColumnPivot.hpp'
 /usr/bin/install -c -m 644 'ClpPrimalColumnSteepest.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpPrimalColumnSteepest.hpp'
 /usr/bin/install -c -m 644 'ClpQuadraticObjective.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpQuadraticObjective.hpp'
 /usr/bin/install -c -m 644 'ClpSimplex.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpSimplex.hpp'
 /usr/bin/install -c -m 644 'ClpSimplexNonlinear.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpSimplexNonlinear.hpp'
 /usr/bin/install -c -m 644 'ClpSimplexOther.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpSimplexOther.hpp'
 /usr/bin/install -c -m 644 'ClpSimplexDual.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpSimplexDual.hpp'
 /usr/bin/install -c -m 644 'ClpSimplexPrimal.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpSimplexPrimal.hpp'
 /usr/bin/install -c -m 644 'ClpSolve.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpSolve.hpp'
 /usr/bin/install -c -m 644 'CbcOrClpParam.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CbcOrClpParam.hpp'
 /usr/bin/install -c -m 644 'Idiot.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/Idiot.hpp'
 /usr/bin/install -c -m 644 'CbcOrClpParam.cpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CbcOrClpParam.cpp'
make[4]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src'
make[3]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src'
Making install in src/OsiClp
make[3]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp'
make[4]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp'
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib"
 /bin/bash ../../../libtool --mode=install /usr/bin/install -c  'libOsiClp.la' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libOsiClp.la'
/usr/bin/install -c .libs/libOsiClp.lai /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libOsiClp.la
/usr/bin/install -c .libs/libOsiClp.a /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libOsiClp.a
chmod 644 /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libOsiClp.a
ranlib /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libOsiClp.a
PATH="$PATH:/sbin" ldconfig -n /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib
----------------------------------------------------------------------
Libraries have been installed in:
   /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'OsiClpSolverInterface.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/OsiClpSolverInterface.hpp'
make[4]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp'
make[3]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp'
make[3]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp'
make[4]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp'
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/share/coin/doc/Clp" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/share/coin/doc/Clp"
for file in README AUTHORS LICENSE ; do \
  if test -f "$file"; then dir=; else dir="./"; fi; \
  if test -f "$dir$file"; then /usr/bin/install -c -m 644 "$dir$file" "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/share/coin/doc/Clp/$file"; fi; \
done 
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig"
 /usr/bin/install -c -m 644 'clp.pc' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig/clp.pc'
 /usr/bin/install -c -m 644 'osi-clp.pc' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig/osi-clp.pc'
make  install-data-hook
make[5]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp'
PKG_CONFIG_PATH=/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib64/pkgconfig:/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig:/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/share/pkgconfig::/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig \
pkg-config --libs clp > /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/share/coin/doc/Clp/clp_addlibs.txt
make[5]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp'
make[4]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp'
make[3]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp'
make[2]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Clp'
Making install in Cgl
make[2]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl'
Making install in src
make[3]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src'
Making install in CglAllDifferent
make[4]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent'
make[5]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent'
make[5]: Nothing to be done for 'install-exec-am'.
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglAllDifferent.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglAllDifferent.hpp'
make[5]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent'
make[4]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent'
Making install in CglClique
make[4]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique'
make[5]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique'
make[5]: Nothing to be done for 'install-exec-am'.
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglClique.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglClique.hpp'
make[5]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique'
make[4]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique'
Making install in CglDuplicateRow
make[4]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow'
make[5]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow'
make[5]: Nothing to be done for 'install-exec-am'.
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglDuplicateRow.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglDuplicateRow.hpp'
make[5]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow'
make[4]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow'
Making install in CglFlowCover
make[4]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover'
make[5]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover'
make[5]: Nothing to be done for 'install-exec-am'.
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglFlowCover.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglFlowCover.hpp'
make[5]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover'
make[4]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover'
Making install in CglGMI
make[4]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI'
make[5]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI'
make[5]: Nothing to be done for 'install-exec-am'.
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglGMI.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglGMI.hpp'
 /usr/bin/install -c -m 644 'CglGMIParam.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglGMIParam.hpp'
make[5]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI'
make[4]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI'
Making install in CglGomory
make[4]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory'
make[5]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory'
make[5]: Nothing to be done for 'install-exec-am'.
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglGomory.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglGomory.hpp'
make[5]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory'
make[4]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory'
Making install in CglKnapsackCover
make[4]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover'
make[5]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover'
make[5]: Nothing to be done for 'install-exec-am'.
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglKnapsackCover.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglKnapsackCover.hpp'
make[5]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover'
make[4]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover'
Making install in CglLandP
make[4]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP'
make[5]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP'
make[5]: Nothing to be done for 'install-exec-am'.
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglLandP.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglLandP.hpp'
 /usr/bin/install -c -m 644 'CglLandPValidator.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglLandPValidator.hpp'
make[5]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP'
make[4]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP'
Making install in CglLiftAndProject
make[4]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject'
make[5]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject'
make[5]: Nothing to be done for 'install-exec-am'.
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglLiftAndProject.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglLiftAndProject.hpp'
make[5]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject'
make[4]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject'
Making install in CglMixedIntegerRounding
make[4]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding'
make[5]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding'
make[5]: Nothing to be done for 'install-exec-am'.
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglMixedIntegerRounding.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglMixedIntegerRounding.hpp'
make[5]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding'
make[4]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding'
Making install in CglMixedIntegerRounding2
make[4]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2'
make[5]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2'
make[5]: Nothing to be done for 'install-exec-am'.
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglMixedIntegerRounding2.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglMixedIntegerRounding2.hpp'
make[5]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2'
make[4]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2'
Making install in CglOddHole
make[4]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole'
make[5]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole'
make[5]: Nothing to be done for 'install-exec-am'.
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglOddHole.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglOddHole.hpp'
make[5]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole'
make[4]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole'
Making install in CglPreProcess
make[4]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess'
make[5]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess'
make[5]: Nothing to be done for 'install-exec-am'.
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglPreProcess.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglPreProcess.hpp'
make[5]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess'
make[4]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess'
Making install in CglProbing
make[4]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing'
make[5]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing'
make[5]: Nothing to be done for 'install-exec-am'.
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglProbing.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglProbing.hpp'
make[5]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing'
make[4]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing'
Making install in CglRedSplit
make[4]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit'
make[5]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit'
make[5]: Nothing to be done for 'install-exec-am'.
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglRedSplit.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglRedSplit.hpp'
 /usr/bin/install -c -m 644 'CglRedSplitParam.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglRedSplitParam.hpp'
make[5]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit'
make[4]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit'
Making install in CglRedSplit2
make[4]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2'
make[5]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2'
make[5]: Nothing to be done for 'install-exec-am'.
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglRedSplit2.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglRedSplit2.hpp'
 /usr/bin/install -c -m 644 'CglRedSplit2Param.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglRedSplit2Param.hpp'
make[5]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2'
make[4]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2'
Making install in CglResidualCapacity
make[4]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity'
make[5]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity'
make[5]: Nothing to be done for 'install-exec-am'.
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglResidualCapacity.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglResidualCapacity.hpp'
make[5]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity'
make[4]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity'
Making install in CglSimpleRounding
make[4]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding'
make[5]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding'
make[5]: Nothing to be done for 'install-exec-am'.
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglSimpleRounding.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglSimpleRounding.hpp'
make[5]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding'
make[4]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding'
Making install in CglTwomir
make[4]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir'
make[5]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir'
make[5]: Nothing to be done for 'install-exec-am'.
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglTwomir.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglTwomir.hpp'
make[5]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir'
make[4]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir'
Making install in CglZeroHalf
make[4]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf'
make[5]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf'
make[5]: Nothing to be done for 'install-exec-am'.
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglZeroHalf.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglZeroHalf.hpp'
 /usr/bin/install -c -m 644 'Cgl012cut.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/Cgl012cut.hpp'
make[5]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf'
make[4]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf'
make[4]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src'
make[5]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src'
/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/install-sh -c -m 644 config_cgl.h /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglConfig.h
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib"
 /bin/bash ../../libtool --mode=install /usr/bin/install -c  'libCgl.la' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libCgl.la'
/usr/bin/install -c .libs/libCgl.lai /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libCgl.la
/usr/bin/install -c .libs/libCgl.a /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libCgl.a
chmod 644 /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libCgl.a
ranlib /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libCgl.a
PATH="$PATH:/sbin" ldconfig -n /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib
----------------------------------------------------------------------
Libraries have been installed in:
   /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglCutGenerator.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglCutGenerator.hpp'
 /usr/bin/install -c -m 644 'CglMessage.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglMessage.hpp'
 /usr/bin/install -c -m 644 'CglStored.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglStored.hpp'
 /usr/bin/install -c -m 644 'CglParam.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglParam.hpp'
 /usr/bin/install -c -m 644 'CglTreeInfo.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglTreeInfo.hpp'
make[5]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src'
make[4]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src'
make[3]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src'
make[3]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl'
make[4]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl'
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/share/coin/doc/Cgl" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/share/coin/doc/Cgl"
for file in README AUTHORS LICENSE ; do \
  if test -f "$file"; then dir=; else dir="./"; fi; \
  if test -f "$dir$file"; then /usr/bin/install -c -m 644 "$dir$file" "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/share/coin/doc/Cgl/$file"; fi; \
done 
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig"
 /usr/bin/install -c -m 644 'cgl.pc' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig/cgl.pc'
make  install-data-hook
make[5]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl'
PKG_CONFIG_PATH=/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib64/pkgconfig:/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig:/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/share/pkgconfig::/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig \
pkg-config --libs cgl > /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/share/coin/doc/Cgl/cgl_addlibs.txt
make[5]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl'
make[4]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl'
make[3]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl'
make[2]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/Cgl'
Making install in SYMPHONY
make[2]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/SYMPHONY'
Making install in src
make[3]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/SYMPHONY/src'
make[4]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/SYMPHONY/src'
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib"
 /bin/bash ../../libtool --mode=install /usr/bin/install -c  'libSym.la' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libSym.la'
/usr/bin/install -c .libs/libSym.lai /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libSym.la
/usr/bin/install -c .libs/libSym.a /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libSym.a
chmod 644 /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libSym.a
ranlib /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libSym.a
PATH="$PATH:/sbin" ldconfig -n /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib
----------------------------------------------------------------------
Libraries have been installed in:
   /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/bin" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/bin"
  /bin/bash ../../libtool --mode=install /usr/bin/install -c 'symphony' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/bin/symphony'
/usr/bin/install -c symphony /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/bin/symphony
/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/SYMPHONY/install-sh -c -m 644 ../include/config_sym.h /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/SymConfig.h
make  install-exec-hook
make[5]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/SYMPHONY/src'
make[5]: Nothing to be done for 'install-exec-hook'.
make[5]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/SYMPHONY/src'
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 '../include/symphony.h' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/symphony.h'
make[4]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/SYMPHONY/src'
make[3]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/SYMPHONY/src'
Making install in src/OsiSym
make[3]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/SYMPHONY/src/OsiSym'
make[4]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/SYMPHONY/src/OsiSym'
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib"
 /bin/bash ../../../libtool --mode=install /usr/bin/install -c  'libOsiSym.la' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libOsiSym.la'
/usr/bin/install -c .libs/libOsiSym.lai /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libOsiSym.la
/usr/bin/install -c .libs/libOsiSym.a /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libOsiSym.a
chmod 644 /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libOsiSym.a
ranlib /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/libOsiSym.a
PATH="$PATH:/sbin" ldconfig -n /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib
----------------------------------------------------------------------
Libraries have been installed in:
   /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'OsiSymSolverInterface.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/OsiSymSolverInterface.hpp'
 /usr/bin/install -c -m 644 'OsiSymSolverParameters.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/OsiSymSolverParameters.hpp'
 /usr/bin/install -c -m 644 'SymWarmStart.hpp' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/SymWarmStart.hpp'
make[4]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/SYMPHONY/src/OsiSym'
make[3]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/SYMPHONY/src/OsiSym'
make[3]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/SYMPHONY'
make[4]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/SYMPHONY'
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/share/coin/doc/SYMPHONY" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/share/coin/doc/SYMPHONY"
for file in README AUTHORS LICENSE ; do \
  if test -f "$file"; then dir=; else dir="./"; fi; \
  if test -f "$dir$file"; then /usr/bin/install -c -m 644 "$dir$file" "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/share/coin/doc/SYMPHONY/$file"; fi; \
done 
test -z "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig" || mkdir -p -- "/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig"
 /usr/bin/install -c -m 644 'symphony.pc' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig/symphony.pc'
 /usr/bin/install -c -m 644 'symphony-app.pc' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig/symphony-app.pc'
 /usr/bin/install -c -m 644 'osi-sym.pc' '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig/osi-sym.pc'
make  install-data-hook
make[5]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/SYMPHONY'
PKG_CONFIG_PATH=/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib64/pkgconfig:/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig:/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/share/pkgconfig::/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig \
pkg-config --libs symphony > /home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/share/coin/doc/SYMPHONY/sym_addlibs.txt
make[5]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/SYMPHONY'
make[4]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/SYMPHONY'
make[3]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/SYMPHONY'
make[2]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY/SYMPHONY'
make[2]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY'
make[3]: Entering directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY'
make[2]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY'
make[1]: Leaving directory '/home/biocbuild/bbs-3.12-bioc/meat/lpsymphony/src/SYMPHONY'
touch SYMPHONY.ts
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG -ISYMPHONY/include  -I/usr/local/include   -fpic  -g -O2  -Wall -c lp_symphony.cc -o lp_symphony.o
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.12-bioc/R/lib -L/usr/local/lib -o lpsymphony.so lp_symphony.o -LSYMPHONY/lib -lSym -lCgl -lOsiClp -lClp -lOsi -lCoinUtils -L/home/biocbuild/bbs-3.12-bioc/R/lib -lRlapack -L/home/biocbuild/bbs-3.12-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.12-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.12-bioc/R/library/00LOCK-lpsymphony/00new/lpsymphony/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (lpsymphony)

Tests output

lpsymphony.Rcheck/tests/testthat.Rout


R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(lpsymphony)
> 
> test_check("lpsymphony")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 3 ]
> 
> proc.time()
   user  system elapsed 
  0.435   0.030   0.447 

Example timings

lpsymphony.Rcheck/lpsymphony-Ex.timings

nameusersystemelapsed
lpsymphony_solve0.0090.0000.008