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BUILD BIN report for lfa on merida1

This page was generated on 2021-02-22 12:43:26 -0500 (Mon, 22 Feb 2021).

To the developers/maintainers of the lfa package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 954/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
lfa 1.20.0
Wei Hao , John D. Storey
Snapshot Date: 2021-02-21 14:52:07 -0500 (Sun, 21 Feb 2021)
URL: https://git.bioconductor.org/packages/lfa
Branch: RELEASE_3_12
Last Commit: cea356f
Last Changed Date: 2020-10-27 11:08:34 -0500 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version exists in internal repository
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version exists in internal repository

Summary

Package: lfa
Version: 1.20.0
Command: rm -rf lfa.buildbin-libdir && mkdir lfa.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh lfa_1.20.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R lfa.buildbin-libdir
StartedAt: 2021-02-22 09:04:41 -0500 (Mon, 22 Feb 2021)
EndedAt: 2021-02-22 09:05:54 -0500 (Mon, 22 Feb 2021)
EllapsedTime: 72.2 seconds
RetCode: 0
Status:   OK  
PackageFile: lfa_1.20.0.tgz
PackageFileSize: 437 KiB

Command output

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###
### Running command:
###
###   rm -rf lfa.buildbin-libdir && mkdir lfa.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh lfa_1.20.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R lfa.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=lfa.buildbin-libdir lfa_1.20.0.tar.gz'
>>>>>>> 

* installing *source* package ‘lfa’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c fastmat.c -o fastmat.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c lfa-init.c -o lfa-init.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c lfa.c -o lfa.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c lreg.c -o lreg.o
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o lfa.so fastmat.o lfa-init.o lfa.o lreg.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.12-bioc/meat/lfa.buildbin-libdir/00LOCK-lfa/00new/lfa/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (lfa)


>>>>>>> 
>>>>>>> FIXING LINKS FOR lfa.buildbin-libdir/lfa/libs/lfa.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "lfa.buildbin-libdir/lfa/libs/lfa.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "lfa.buildbin-libdir/lfa/libs/lfa.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "lfa.buildbin-libdir/lfa/libs/lfa.so"
install_name_tool -change "/usr/local/gfortran/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "lfa.buildbin-libdir/lfa/libs/lfa.so"
install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "lfa.buildbin-libdir/lfa/libs/lfa.so"