Back to Multiple platform build/check report for BioC 3.18:   simplified   long
ABCDEFGH[I]JKLMNOPQRSTUVWXYZ

This page was generated on 2024-03-27 11:36:46 -0400 (Wed, 27 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4667
palomino4Windows Server 2022 Datacenterx644.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" 4403
merida1macOS 12.7.1 Montereyx86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4426
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1010/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
imageHTS 1.52.0  (landing page)
Joseph Barry
Snapshot Date: 2024-03-25 14:05:07 -0400 (Mon, 25 Mar 2024)
git_url: https://git.bioconductor.org/packages/imageHTS
git_branch: RELEASE_3_18
git_last_commit: da5f387
git_last_commit_date: 2023-10-24 09:44:32 -0400 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino4Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.6.1 Ventura / arm64see weekly results here

BUILD results for imageHTS on palomino4


To the developers/maintainers of the imageHTS package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/imageHTS.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: imageHTS
Version: 1.52.0
Command: chmod a+r imageHTS -R && F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data imageHTS
StartedAt: 2024-03-25 19:10:50 -0400 (Mon, 25 Mar 2024)
EndedAt: 2024-03-25 19:11:43 -0400 (Mon, 25 Mar 2024)
EllapsedTime: 53.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r imageHTS -R && F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data imageHTS
###
##############################################################################
##############################################################################


* checking for file 'imageHTS/DESCRIPTION' ... OK
* preparing 'imageHTS':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'imageHTS-introduction.Rnw' using Sweave
Loading required package: EBImage

Attaching package: 'EBImage'

The following object is masked _by_ '.GlobalEnv':

    display

Loading required package: cellHTS2
Loading required package: RColorBrewer
Loading required package: Biobase
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.


Attaching package: 'Biobase'

The following object is masked from 'package:EBImage':

    channel

Loading required package: genefilter
Loading required package: splots
Loading required package: vsn
Loading required package: hwriter
Loading required package: locfit
locfit 1.5-9.9 	 2024-03-01
Loading required package: grid
Warning: Package 'imageHTS' is deprecated and will be removed from Bioconductor
  version 3.19

Error: processing vignette 'imageHTS-introduction.Rnw' failed with diagnostics:
 chunk 8 (label = segmentWells1) 
Error in nx < 1 || lwd < 0 : 'length = 2' in coercion to 'logical(1)'

--- failed re-building 'imageHTS-introduction.Rnw'

SUMMARY: processing the following file failed:
  'imageHTS-introduction.Rnw'

Error: Vignette re-building failed.
Execution halted