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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:iSEEfier.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings iSEEfier_1.0.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/iSEEfier.Rcheck’
* using R version 4.4.0 (2024-04-24)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘iSEEfier/DESCRIPTION’ ... OK
* this is package ‘iSEEfier’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘iSEEfier’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                       user system elapsed
glue_initials        20.671  1.376  23.444
view_initial_tiles    9.665  0.540  10.455
iSEEinit              9.494  0.522  10.247
view_initial_network  9.332  0.542  10.146
iSEEnrich             6.642  0.525   7.407
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
   23. │                                         └─alabaster.se (local) meth(path, metadata = metadata, ...)
   24. │                                           └─alabaster.base::altReadObject(path, metadata = metadata, ...)
   25. │                                             └─scRNAseq (local) FUN(...)
   26. │                                               └─alabaster.base::readObject(...)
   27. │                                                 └─alabaster.se (local) meth(path, metadata = metadata, ...)
   28. │                                                   └─alabaster.base::altReadObject(...)
   29. │                                                     └─scRNAseq (local) FUN(...)
   30. │                                                       └─alabaster.base::readObject(...)
   31. │                                                         └─alabaster.matrix (local) meth(path, metadata = metadata, ...)
   32. │                                                           └─(function() {...
   33. │                                                             └─rhdf5::H5Fopen(fpath)
   34. └─base::.handleSimpleError(...)
   35.   └─testthat (local) h(simpleError(msg, call))
   36.     └─rlang::abort(...)
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR
See
  ‘/Users/biocbuild/bbs-3.19-bioc/meat/iSEEfier.Rcheck/00check.log’
for details.