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This page was generated on 2024-03-27 11:36:45 -0400 (Wed, 27 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4667
palomino4Windows Server 2022 Datacenterx644.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" 4403
merida1macOS 12.7.1 Montereyx86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4426
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 989/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
iBMQ 1.42.0  (landing page)
Greg Imholte
Snapshot Date: 2024-03-25 14:05:07 -0400 (Mon, 25 Mar 2024)
git_url: https://git.bioconductor.org/packages/iBMQ
git_branch: RELEASE_3_18
git_last_commit: 53c04e4
git_last_commit_date: 2023-10-24 09:52:19 -0400 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.1 Monterey / x86_64... NOT SUPPORTED ...
kjohnson1macOS 13.6.1 Ventura / arm64see weekly results here

BUILD BIN results for iBMQ on palomino4


To the developers/maintainers of the iBMQ package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/iBMQ.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: iBMQ
Version: 1.42.0
Command: rm -rf iBMQ.buildbin-libdir && mkdir iBMQ.buildbin-libdir && F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL --build --library=iBMQ.buildbin-libdir iBMQ_1.42.0.tar.gz
StartedAt: 2024-03-26 07:15:16 -0400 (Tue, 26 Mar 2024)
EndedAt: 2024-03-26 07:15:46 -0400 (Tue, 26 Mar 2024)
EllapsedTime: 29.5 seconds
RetCode: 0
Status:   OK  
PackageFile: iBMQ_1.42.0.zip
PackageFileSize: 2.442 MiB

Command output

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###
### Running command:
###
###   rm -rf iBMQ.buildbin-libdir && mkdir iBMQ.buildbin-libdir && F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL --build --library=iBMQ.buildbin-libdir iBMQ_1.42.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'iBMQ' ...
** using staged installation

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
using C compiler: 'gcc.exe (GCC) 12.3.0'
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp    -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ARS.c -o ARS.o
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp    -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RngStream.c -o RngStream.o
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp    -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c iBMQ_common.c -o iBMQ_common.o
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp    -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c main_parallel_sparse.c -o main_parallel_sparse.o
main_parallel_sparse.c: In function 'iBMQ_main':
main_parallel_sparse.c:255:33: warning: 'Cfile' may be used uninitialized [-Wmaybe-uninitialized]
  255 |                                 store_mcmc_output(Afile, Bfile, Pfile, Mufile, Sig2file, Cfile,
      |                                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  256 |                                                 n_snps, n_genes, A, B, P, Mu, Sig2, C);
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
main_parallel_sparse.c:83:59: note: 'Cfile' was declared here
   83 |         FILE *Pfile, *Afile, *Bfile, *Mufile, *Sig2file, *Cfile;
      |                                                           ^~~~~
main_parallel_sparse.c:255:33: warning: 'Sig2file' may be used uninitialized [-Wmaybe-uninitialized]
  255 |                                 store_mcmc_output(Afile, Bfile, Pfile, Mufile, Sig2file, Cfile,
      |                                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  256 |                                                 n_snps, n_genes, A, B, P, Mu, Sig2, C);
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
main_parallel_sparse.c:83:48: note: 'Sig2file' was declared here
   83 |         FILE *Pfile, *Afile, *Bfile, *Mufile, *Sig2file, *Cfile;
      |                                                ^~~~~~~~
main_parallel_sparse.c:255:33: warning: 'Mufile' may be used uninitialized [-Wmaybe-uninitialized]
  255 |                                 store_mcmc_output(Afile, Bfile, Pfile, Mufile, Sig2file, Cfile,
      |                                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  256 |                                                 n_snps, n_genes, A, B, P, Mu, Sig2, C);
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
main_parallel_sparse.c:83:39: note: 'Mufile' was declared here
   83 |         FILE *Pfile, *Afile, *Bfile, *Mufile, *Sig2file, *Cfile;
      |                                       ^~~~~~
main_parallel_sparse.c:255:33: warning: 'Bfile' may be used uninitialized [-Wmaybe-uninitialized]
  255 |                                 store_mcmc_output(Afile, Bfile, Pfile, Mufile, Sig2file, Cfile,
      |                                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  256 |                                                 n_snps, n_genes, A, B, P, Mu, Sig2, C);
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
main_parallel_sparse.c:83:31: note: 'Bfile' was declared here
   83 |         FILE *Pfile, *Afile, *Bfile, *Mufile, *Sig2file, *Cfile;
      |                               ^~~~~
main_parallel_sparse.c:255:33: warning: 'Afile' may be used uninitialized [-Wmaybe-uninitialized]
  255 |                                 store_mcmc_output(Afile, Bfile, Pfile, Mufile, Sig2file, Cfile,
      |                                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  256 |                                                 n_snps, n_genes, A, B, P, Mu, Sig2, C);
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
main_parallel_sparse.c:83:23: note: 'Afile' was declared here
   83 |         FILE *Pfile, *Afile, *Bfile, *Mufile, *Sig2file, *Cfile;
      |                       ^~~~~
main_parallel_sparse.c:255:33: warning: 'Pfile' may be used uninitialized [-Wmaybe-uninitialized]
  255 |                                 store_mcmc_output(Afile, Bfile, Pfile, Mufile, Sig2file, Cfile,
      |                                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  256 |                                                 n_snps, n_genes, A, B, P, Mu, Sig2, C);
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
main_parallel_sparse.c:83:15: note: 'Pfile' was declared here
   83 |         FILE *Pfile, *Afile, *Bfile, *Mufile, *Sig2file, *Cfile;
      |               ^~~~~
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp    -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c main_parallel_sparse_constC.c -o main_parallel_sparse_constC.o
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp    -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c norm_gamma_generation.c -o norm_gamma_generation.o
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp    -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c sparse.c -o sparse.o
gcc -shared -s -static-libgcc -o iBMQ.dll tmp.def ARS.o RngStream.o iBMQ_common.o main_parallel_sparse.o main_parallel_sparse_constC.o norm_gamma_generation.o sparse.o -L/x64/lib -lgsl -lgslcblas -lm -fopenmp -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.18-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.18-bioc/meat/iBMQ.buildbin-libdir/00LOCK-iBMQ/00new/iBMQ/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'iBMQ' as iBMQ_1.42.0.zip
* DONE (iBMQ)