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This page was generated on 2021-12-01 17:17:51 -0500 (Wed, 01 Dec 2021).

INSTALL results for hipathia on tokay2

To the developers/maintainers of the hipathia package:
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raw results

Package 875/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
hipathia 2.10.0  (landing page)
Marta R. Hidalgo
Snapshot Date: 2021-11-30 04:15:05 -0500 (Tue, 30 Nov 2021)
git_url: https://git.bioconductor.org/packages/hipathia
git_branch: RELEASE_3_14
git_last_commit: bc0e4d8
git_last_commit_date: 2021-10-26 12:44:06 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: hipathia
Version: 2.10.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/hipathia_2.10.0.tar.gz && rm -rf hipathia.buildbin-libdir && mkdir hipathia.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=hipathia.buildbin-libdir hipathia_2.10.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL hipathia_2.10.0.zip && rm hipathia_2.10.0.tar.gz hipathia_2.10.0.zip
StartedAt: 2021-11-30 08:44:41 -0500 (Tue, 30 Nov 2021)
EndedAt: 2021-11-30 08:47:04 -0500 (Tue, 30 Nov 2021)
EllapsedTime: 142.5 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/hipathia_2.10.0.tar.gz && rm -rf hipathia.buildbin-libdir && mkdir hipathia.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=hipathia.buildbin-libdir hipathia_2.10.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL hipathia_2.10.0.zip && rm hipathia_2.10.0.tar.gz hipathia_2.10.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  3 5163k    3  167k    0     0   740k      0  0:00:06 --:--:--  0:00:06  740k
 55 5163k   55 2848k    0     0  2305k      0  0:00:02  0:00:01  0:00:01 2306k
100 5163k  100 5163k    0     0  2763k      0  0:00:01  0:00:01 --:--:-- 2764k

install for i386

* installing *source* package 'hipathia' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'hipathia'
    finding HTML links ... done
    annotate_paths                          html  
    brca                                    html  
    brca_data                               html  
    brca_design                             html  
    comp                                    html  
    create_report                           html  
    do_pca                                  html  
    do_wilcoxon                             html  
    exp_data                                html  
    get_go_names                            html  
    get_highest_sig_ancestor                html  
    get_node_names                          html  
    get_nodes_data                          html  
    get_path_names                          html  
    get_paths_data                          html  
    get_pathway_functions                   html  
    get_pathways_annotations                html  
    get_pathways_list                       html  
    get_pathways_summary                    html  
    go_vals                                 html  
    heatmap_plot                            html  
    hhead                                   html  
    hipathia                                html  
    igraphs_upgrade                         html  
    is_accepted_species                     html  
    load_annofuns                           html  
    load_annots                             html  
    load_entrez_hgnc                        html  
    load_gobp_frame                         html  
    load_gobp_net                           html  
    load_mgi                                html  
    load_pathways                           html  
    load_pseudo_mgi                         html  
    load_xref                               html  
    mgi_from_sif                            html  
    multiple_pca_plot                       html  
    node_color                              html  
    node_color_per_de                       html  
    normalize_data                          html  
    normalize_paths                         html  
    path_vals                               html  
    paths_to_go_ancestor                    html  
    pathway_comparison_plot                 html  
    pca_plot                                html  
    quantify_terms                          html  
    results                                 html  
    save_results                            html  
    top_pathways                            html  
    translate_data                          html  
    translate_matrix                        html  
    visualize_report                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'hipathia' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'hipathia' as hipathia_2.10.0.zip
* DONE (hipathia)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'hipathia' successfully unpacked and MD5 sums checked