############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL gpuMagic ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’ * installing *source* package ‘gpuMagic’ ... ** using staged installation ** libs using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ using C++11 g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I/home/biocbuild/bbs-3.19-bioc/R/include -I../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -DCL_SILENCE_DEPRECATION -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -c C_Interface.cpp -o C_Interface.o C_Interface.cpp: In function ‘SEXPREC* download(SEXP)’: C_Interface.cpp:142:19: warning: ‘res’ may be used uninitialized in this function [-Wmaybe-uninitialized] 142 | return(res); | ^ g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I/home/biocbuild/bbs-3.19-bioc/R/include -I../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -DCL_SILENCE_DEPRECATION -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -c R_functionRegistration.cpp -o R_functionRegistration.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I/home/biocbuild/bbs-3.19-bioc/R/include -I../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -DCL_SILENCE_DEPRECATION -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -c Tools.cpp -o Tools.o Tools.cpp: In function ‘void errorHandle(std::string)’: Tools.cpp:41:14: warning: format not a string literal and no format arguments [-Wformat-security] 41 | error(errorInfo.c_str()); Tools.cpp: In function ‘void warningHandle(std::string)’: Tools.cpp:51:16: warning: format not a string literal and no format arguments [-Wformat-security] 51 | warning(warningInfo.c_str()); Tools.cpp: In function ‘void message(std::string)’: Tools.cpp:60:16: warning: format not a string literal and no format arguments [-Wformat-security] 60 | Rprintf(msg.c_str()); | ~~~~~~~^~~~~~~~~~~~~ g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I/home/biocbuild/bbs-3.19-bioc/R/include -I../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -DCL_SILENCE_DEPRECATION -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -c kernelManager.cpp -o kernelManager.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I/home/biocbuild/bbs-3.19-bioc/R/include -I../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -DCL_SILENCE_DEPRECATION -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -c openArray.cpp -o openArray.o g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.19-bioc/R/lib -L/usr/local/lib -o gpuMagic.so C_Interface.o R_functionRegistration.o Tools.o kernelManager.o openArray.o -lOpenCL -L/home/biocbuild/bbs-3.19-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.19-bioc/R/site-library/00LOCK-gpuMagic/00new/gpuMagic/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location No device has been found, please make sure the computer has a graphic card or the driver has been properly installed. Hint: For CPU, you can install the intel's / ATI's graphic driver for the intel's / AMD's CPU respectively. For GPU, you need to download the graphic driver from your vendor's website. ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location No device has been found, please make sure the computer has a graphic card or the driver has been properly installed. Hint: For CPU, you can install the intel's / ATI's graphic driver for the intel's / AMD's CPU respectively. For GPU, you need to download the graphic driver from your vendor's website. ** testing if installed package keeps a record of temporary installation path * DONE (gpuMagic)