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INSTALL report for gcapc on tokay1

This page was generated on 2021-01-19 11:55:19 -0500 (Tue, 19 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE gcapc PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 667/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gcapc 1.14.0
Mingxiang Teng
Snapshot Date: 2021-01-18 14:42:24 -0500 (Mon, 18 Jan 2021)
URL: https://git.bioconductor.org/packages/gcapc
Branch: RELEASE_3_12
Last Commit: 6c7d83d
Last Changed Date: 2020-10-27 11:20:02 -0500 (Tue, 27 Oct 2020)
malbec1 Linux (Ubuntu 18.04.5 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK 
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: gcapc
Version: 1.14.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/gcapc_1.14.0.tar.gz && rm -rf gcapc.buildbin-libdir && mkdir gcapc.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gcapc.buildbin-libdir gcapc_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL gcapc_1.14.0.zip && rm gcapc_1.14.0.tar.gz gcapc_1.14.0.zip
StartedAt: 2021-01-18 18:05:11 -0500 (Mon, 18 Jan 2021)
EndedAt: 2021-01-18 18:05:57 -0500 (Mon, 18 Jan 2021)
EllapsedTime: 45.4 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/gcapc_1.14.0.tar.gz && rm -rf gcapc.buildbin-libdir && mkdir gcapc.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gcapc.buildbin-libdir gcapc_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL gcapc_1.14.0.zip && rm gcapc_1.14.0.tar.gz gcapc_1.14.0.zip
###
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  0 3418k    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 3418k  100 3418k    0     0  6229k      0 --:--:-- --:--:-- --:--:-- 6260k

install for i386

* installing *source* package 'gcapc' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'gcapc'
    finding HTML links ... done
    bindWidth                               html  
    gcEffects                               html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgbq5UY/R.INSTALL185c125010cb/gcapc/man/gcEffects.Rd:92: file link 'BSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgbq5UY/R.INSTALL185c125010cb/gcapc/man/gcEffects.Rd:95: file link 'getBSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgbq5UY/R.INSTALL185c125010cb/gcapc/man/gcEffects.Rd:97: file link 'getBSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
    gcapcPeaks                              html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgbq5UY/R.INSTALL185c125010cb/gcapc/man/gcapcPeaks.Rd:47: file link 'BSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgbq5UY/R.INSTALL185c125010cb/gcapc/man/gcapcPeaks.Rd:50: file link 'getBSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgbq5UY/R.INSTALL185c125010cb/gcapc/man/gcapcPeaks.Rd:52: file link 'getBSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
    peaksCAT                                html  
    read5endCoverage                        html  
    refinePeaks                             html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgbq5UY/R.INSTALL185c125010cb/gcapc/man/refinePeaks.Rd:42: file link 'BSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgbq5UY/R.INSTALL185c125010cb/gcapc/man/refinePeaks.Rd:45: file link 'getBSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgbq5UY/R.INSTALL185c125010cb/gcapc/man/refinePeaks.Rd:47: file link 'getBSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
    refineSites                             html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgbq5UY/R.INSTALL185c125010cb/gcapc/man/refineSites.Rd:93: file link 'BSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgbq5UY/R.INSTALL185c125010cb/gcapc/man/refineSites.Rd:96: file link 'getBSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgbq5UY/R.INSTALL185c125010cb/gcapc/man/refineSites.Rd:98: file link 'getBSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'gcapc' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'gcapc' as gcapc_1.14.0.zip
* DONE (gcapc)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'gcapc' successfully unpacked and MD5 sums checked