############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data flowStats ### ############################################################################## ############################################################################## * checking for file ‘flowStats/DESCRIPTION’ ... OK * preparing ‘flowStats’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘GettingStartedWithFlowStats.Rnw’ using Sweave Warning: replacing previous import ‘flowViz::contour’ by ‘graphics::contour’ when loading ‘flowStats’ As part of improvements to flowWorkspace, some behavior of GatingSet objects has changed. For details, please read the section titled "The cytoframe and cytoset classes" in the package vignette: vignette("flowWorkspace-Introduction", "flowWorkspace") Loading required package: ggplot2 Loading required package: ncdfFlow Loading required package: BH Loading required package: scales done! Error: processing vignette 'GettingStartedWithFlowStats.Rnw' failed with diagnostics: attempt to apply non-function --- failed re-building ‘GettingStartedWithFlowStats.Rnw’ SUMMARY: processing the following file failed: ‘GettingStartedWithFlowStats.Rnw’ Error: Vignette re-building failed. Execution halted