############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD INSTALL flowPeaks ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library’ * installing *source* package ‘flowPeaks’ ... ** using staged installation ** libs using C++ compiler: ‘g++ (GCC) 10.3.1’ g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I/usr/local/include `gsl-config --cflags` -fPIC -g -O2 -Wall -c Rpack.cpp -o Rpack.o Rpack.cpp: In function ‘void Rpack_relevel(int*, int*, int*, int*, int*, int*)’: Rpack.cpp:141:18: warning: comparison of integer expressions of different signedness: ‘std::map::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 141 | if(levels.size()<(i+1)){ | ~~~~~~~~~~~~~^~~~~~ g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I/usr/local/include `gsl-config --cflags` -fPIC -g -O2 -Wall -c Rregistrate.cpp -o Rregistrate.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I/usr/local/include `gsl-config --cflags` -fPIC -g -O2 -Wall -c VoronoiDiagramGenerator.cpp -o VoronoiDiagramGenerator.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I/usr/local/include `gsl-config --cflags` -fPIC -g -O2 -Wall -c flowPeaks.cpp -o flowPeaks.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I/usr/local/include `gsl-config --cflags` -fPIC -g -O2 -Wall -c func_collect.cpp -o func_collect.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I/usr/local/include `gsl-config --cflags` -fPIC -g -O2 -Wall -c func_collect_supp.cpp -o func_collect_supp.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I/usr/local/include `gsl-config --cflags` -fPIC -g -O2 -Wall -c gvector_gmatrix.cpp -o gvector_gmatrix.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I/usr/local/include `gsl-config --cflags` -fPIC -g -O2 -Wall -c kd_tree.cpp -o kd_tree.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I/usr/local/include `gsl-config --cflags` -fPIC -g -O2 -Wall -c kmns.cpp -o kmns.o g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-beta-2024-04-15_r86425/lib -L/usr/local/lib -o flowPeaks.so Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o -L/usr/local/lib -lgsl -lgslcblas -lm -L/home/biocbuild/R/R-beta-2024-04-15_r86425/lib -lR installing to /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/00LOCK-flowPeaks/00new/flowPeaks/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (flowPeaks)