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This page was generated on 2024-03-02 11:36:31 -0500 (Sat, 02 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.3.2 Patched (2023-11-13 r85521) -- "Eye Holes" 4692
palomino4Windows Server 2022 Datacenterx644.3.2 (2023-10-31 ucrt) -- "Eye Holes" 4445
lconwaymacOS 12.7.1 Montereyx86_644.3.2 Patched (2023-11-01 r85457) -- "Eye Holes" 4466
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 735/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowPeaks 1.48.0  (landing page)
Yongchao Ge
Snapshot Date: 2024-03-01 14:05:09 -0500 (Fri, 01 Mar 2024)
git_url: https://git.bioconductor.org/packages/flowPeaks
git_branch: RELEASE_3_18
git_last_commit: d503362
git_last_commit_date: 2023-10-24 09:50:23 -0500 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.1 Ventura / arm64see weekly results here

INSTALL results for flowPeaks on palomino4


To the developers/maintainers of the flowPeaks package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowPeaks.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: flowPeaks
Version: 1.48.0
Command: F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL flowPeaks
StartedAt: 2024-03-01 15:31:58 -0500 (Fri, 01 Mar 2024)
EndedAt: 2024-03-01 15:32:28 -0500 (Fri, 01 Mar 2024)
EllapsedTime: 29.8 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL flowPeaks
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* installing to library 'F:/biocbuild/bbs-3.18-bioc/R/library'
* installing *source* package 'flowPeaks' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 12.3.0'
rm -f flowPeaks.dll Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o
"F:/biocbuild/bbs-3.18-bioc/R/bin/x64/Rscript.exe" "../tools/winlibs.R" 2.4
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG     -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Rpack.cpp -o Rpack.o
Rpack.cpp: In function 'void Rpack_relevel(int*, int*, int*, int*, int*, int*)':
Rpack.cpp:141:25: warning: comparison of integer expressions of different signedness: 'std::map<int, int>::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
  141 |         if(levels.size()<(i+1)){
      |            ~~~~~~~~~~~~~^~~~~~
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG     -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Rregistrate.cpp -o Rregistrate.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG     -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c VoronoiDiagramGenerator.cpp -o VoronoiDiagramGenerator.o
VoronoiDiagramGenerator.cpp: In member function 'void VoronoiDiagramGenerator::out_site(Site*)':
VoronoiDiagramGenerator.cpp:803:12: warning: suggest parentheses around operand of '!' or change '&' to '&&' or '!' to '~' [-Wparentheses]
  803 |         if(!triangulate & plot & !debug)
      |            ^~~~~~~~~~~~
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG     -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c flowPeaks.cpp -o flowPeaks.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG     -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c func_collect.cpp -o func_collect.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG     -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c func_collect_supp.cpp -o func_collect_supp.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG     -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c gvector_gmatrix.cpp -o gvector_gmatrix.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG     -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c kd_tree.cpp -o kd_tree.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG     -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c kmns.cpp -o kmns.o
g++ -std=gnu++17 -shared -s -static-libgcc -o flowPeaks.dll tmp.def Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o -L../windows/gsl-master/lib/x64 -lgsl -lgslcblas -lm -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.18-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.18-bioc/R/library/00LOCK-flowPeaks/00new/flowPeaks/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (flowPeaks)