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INSTALL report for flowCyBar on tokay1

This page was generated on 2021-02-22 12:38:11 -0500 (Mon, 22 Feb 2021).

To the developers/maintainers of the flowCyBar package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 619/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowCyBar 1.26.0
Joachim Schumann
Snapshot Date: 2021-02-21 14:52:07 -0500 (Sun, 21 Feb 2021)
URL: https://git.bioconductor.org/packages/flowCyBar
Branch: RELEASE_3_12
Last Commit: b771c10
Last Changed Date: 2020-10-27 10:55:53 -0500 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: flowCyBar
Version: 1.26.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/flowCyBar_1.26.0.tar.gz && rm -rf flowCyBar.buildbin-libdir && mkdir flowCyBar.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowCyBar.buildbin-libdir flowCyBar_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL flowCyBar_1.26.0.zip && rm flowCyBar_1.26.0.tar.gz flowCyBar_1.26.0.zip
StartedAt: 2021-02-21 16:49:09 -0500 (Sun, 21 Feb 2021)
EndedAt: 2021-02-21 16:49:45 -0500 (Sun, 21 Feb 2021)
EllapsedTime: 35.4 seconds
RetCode: 0
Status:   OK   

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/flowCyBar_1.26.0.tar.gz && rm -rf flowCyBar.buildbin-libdir && mkdir flowCyBar.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowCyBar.buildbin-libdir flowCyBar_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL flowCyBar_1.26.0.zip && rm flowCyBar_1.26.0.tar.gz flowCyBar_1.26.0.zip
###
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install for i386

* installing *source* package 'flowCyBar' ...
files 'build/vignette.rds', 'inst/doc/flowCyBar-manual.R', 'inst/doc/flowCyBar-manual.Rnw', 'inst/doc/flowCyBar-manual.bib', 'inst/doc/flowCyBar-manual.pdf' are missing
files 'DESCRIPTION', 'R/correlation.R', 'R/cybar_plot.R', 'R/nmds.R', 'R/normalize.R', 'man/correlation.Rd', 'man/cybar_plot.Rd', 'man/flowCyBar-package.Rd', 'man/nmds.Rd', 'man/normalize.Rd', 'vignettes/flowCyBar-manual.Rnw' have the wrong MD5 checksums
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'flowCyBar'
    finding HTML links ... done
    Abiotic_data_sample                     html  
    Cell_number_sample                      html  
    Corr_data_sample                        html  
    correlation                             html  
    cybar_plot                              html  
    flowCyBar-package                       html  
    nmds                                    html  
    normalize                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'flowCyBar' ...
files 'build/vignette.rds', 'inst/doc/flowCyBar-manual.R', 'inst/doc/flowCyBar-manual.Rnw', 'inst/doc/flowCyBar-manual.bib', 'inst/doc/flowCyBar-manual.pdf' are missing
files 'DESCRIPTION', 'R/correlation.R', 'R/cybar_plot.R', 'R/nmds.R', 'R/normalize.R', 'man/correlation.Rd', 'man/cybar_plot.Rd', 'man/flowCyBar-package.Rd', 'man/nmds.Rd', 'man/normalize.Rd', 'vignettes/flowCyBar-manual.Rnw' have the wrong MD5 checksums
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowCyBar' as flowCyBar_1.26.0.zip
* DONE (flowCyBar)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'flowCyBar' successfully unpacked and MD5 sums checked