##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD INSTALL flowCore
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library’
* installing *source* package ‘flowCore’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 10.3.1’
using C++17
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cpp11/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cytolib/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RProtoBufLib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c FastLogicle.cpp -o FastLogicle.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cpp11/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cytolib/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RProtoBufLib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c Hyperlog.cpp -o Hyperlog.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cpp11/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cytolib/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RProtoBufLib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c Logicle.cpp -o Logicle.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cpp11/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cytolib/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RProtoBufLib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c biexponential.cpp -o biexponential.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cpp11/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cytolib/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RProtoBufLib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c convertRawBytes.cpp -o convertRawBytes.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cpp11/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cytolib/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RProtoBufLib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c cpp11.cpp -o cpp11.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cpp11/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cytolib/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RProtoBufLib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c fcsTextParse.cpp -o fcsTextParse.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cpp11/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cytolib/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RProtoBufLib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c hyperlogTransform.cpp -o hyperlogTransform.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cpp11/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cytolib/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RProtoBufLib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c inPolygon.cpp -o inPolygon.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cpp11/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cytolib/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RProtoBufLib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c inPolytope.cpp -o inPolytope.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cpp11/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cytolib/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RProtoBufLib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c logicleTransform.cpp -o logicleTransform.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cpp11/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cytolib/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RProtoBufLib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c poly_centroid.cpp -o poly_centroid.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cpp11/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cytolib/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RProtoBufLib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c sortBytes.cpp -o sortBytes.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cpp11/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cytolib/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RProtoBufLib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c uint2double.cpp -o uint2double.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cpp11/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cytolib/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RProtoBufLib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c zeroin.cpp -o zeroin.o
g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-beta-2024-04-15_r86425/lib -L/usr/local/lib -o flowCore.so FastLogicle.o Hyperlog.o Logicle.o biexponential.o convertRawBytes.o cpp11.o fcsTextParse.o hyperlogTransform.o inPolygon.o inPolytope.o logicleTransform.o poly_centroid.o sortBytes.o uint2double.o zeroin.o /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cytolib/lib/libcytolib.a -L/home/biocbuild/R/R-beta-2024-04-15_r86425/lib -lR
if [ `uname -s` = 'Darwin' ]; then install_name_tool -change /usr/local/clang4/lib/libc++.1.dylib /usr/lib/libc++.1.dylib flowCore.so; fi
installing to /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/00LOCK-flowCore/00new/flowCore/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (flowCore)