Back to Multiple platform build/check report for BioC 3.18: simplified long |
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This page was generated on 2024-03-29 11:35:57 -0400 (Fri, 29 Mar 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4669 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" | 4404 |
merida1 | macOS 12.7.1 Monterey | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4427 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 706/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
ffpe 1.46.0 (landing page) Levi Waldron
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
To the developers/maintainers of the ffpe package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ffpe.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: ffpe |
Version: 1.46.0 |
Command: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:ffpe.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings ffpe_1.46.0.tar.gz |
StartedAt: 2024-03-27 22:28:22 -0400 (Wed, 27 Mar 2024) |
EndedAt: 2024-03-27 22:34:59 -0400 (Wed, 27 Mar 2024) |
EllapsedTime: 397.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ffpe.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:ffpe.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings ffpe_1.46.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/ffpe.Rcheck’ * using R version 4.3.3 (2024-02-29) * using platform: x86_64-pc-linux-gnu (64-bit) * R was compiled by gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 * running under: Ubuntu 22.04.4 LTS * using session charset: UTF-8 * checking for file ‘ffpe/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘ffpe’ version ‘1.46.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ffpe’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE CATplot: no visible global function definition for ‘abline’ sampleQC,matrix : makeplots: no visible global function definition for ‘cor’ sampleQC,matrix : makeplots: no visible global function definition for ‘median’ sampleQC,matrix : makeplots: no visible binding for global variable ‘median’ sampleQC,matrix : makeplots: no visible global function definition for ‘na.omit’ sampleQC,matrix : makeplots: no visible global function definition for ‘loess’ sampleQC,matrix : makeplots: no visible global function definition for ‘predict’ sampleQC,matrix : makeplots: no visible global function definition for ‘IQR’ sampleQC,matrix : makeplots: no visible global function definition for ‘abline’ sampleQC,matrix : makeplots: no visible global function definition for ‘legend’ sampleQC,matrix : makeplots: no visible global function definition for ‘lines’ sampleQC,matrix: no visible binding for global variable ‘IQR’ sampleQC,matrix: no visible global function definition for ‘na.omit’ sortedIqrPlot,matrix: no visible binding for global variable ‘quantile’ sortedIqrPlot,matrix: no visible global function definition for ‘segments’ sortedIqrPlot,matrix: no visible binding for global variable ‘IQR’ Undefined global functions or variables: IQR abline cor legend lines loess median na.omit predict quantile segments Consider adding importFrom("graphics", "abline", "legend", "lines", "segments") importFrom("stats", "IQR", "cor", "loess", "median", "na.omit", "predict", "quantile") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘ffpe.Rnw’... OK OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.18-bioc/meat/ffpe.Rcheck/00check.log’ for details.
ffpe.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD INSTALL ffpe ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.18-bioc/R/site-library’ * installing *source* package ‘ffpe’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading No methods found in package ‘RSQLite’ for request: ‘dbListFields’ when loading ‘lumi’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location No methods found in package ‘RSQLite’ for request: ‘dbListFields’ when loading ‘lumi’ ** testing if installed package can be loaded from final location No methods found in package ‘RSQLite’ for request: ‘dbListFields’ when loading ‘lumi’ ** testing if installed package keeps a record of temporary installation path * DONE (ffpe)
ffpe.Rcheck/ffpe-Ex.timings
name | user | system | elapsed | |
CATplot | 3.997 | 0.364 | 4.362 | |
ffpe-package | 2.983 | 0.266 | 3.249 | |
sampleQC | 2.039 | 0.056 | 2.096 | |
sortedIqrPlot | 0.827 | 0.048 | 0.875 | |