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This page was generated on 2024-03-04 11:36:25 -0500 (Mon, 04 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.3.2 Patched (2023-11-13 r85521) -- "Eye Holes" 4692
palomino4Windows Server 2022 Datacenterx644.3.2 (2023-10-31 ucrt) -- "Eye Holes" 4445
lconwaymacOS 12.7.1 Montereyx86_644.3.2 Patched (2023-11-01 r85457) -- "Eye Holes" 4466
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 698/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
fcoex 1.16.0  (landing page)
Tiago Lubiana
Snapshot Date: 2024-03-03 14:05:05 -0500 (Sun, 03 Mar 2024)
git_url: https://git.bioconductor.org/packages/fcoex
git_branch: RELEASE_3_18
git_last_commit: ccbe902
git_last_commit_date: 2023-10-24 11:18:00 -0500 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino4Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.6.1 Ventura / arm64see weekly results here

BUILD results for fcoex on palomino4


To the developers/maintainers of the fcoex package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/fcoex.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: fcoex
Version: 1.16.0
Command: chmod a+r fcoex -R && F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data fcoex
StartedAt: 2024-03-03 18:45:08 -0500 (Sun, 03 Mar 2024)
EndedAt: 2024-03-03 18:46:30 -0500 (Sun, 03 Mar 2024)
EllapsedTime: 82.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   chmod a+r fcoex -R && F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data fcoex
###
##############################################################################
##############################################################################


* checking for file 'fcoex/DESCRIPTION' ... OK
* preparing 'fcoex':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'fcoex.Rmd' using rmarkdown

Quitting from lines 91-92 [Finding cbf modules] (fcoex.Rmd)
Error: processing vignette 'fcoex.Rmd' failed with diagnostics:
cannot xtfrm data frames
--- failed re-building 'fcoex.Rmd'

--- re-building 'fcoex_and_seurat.Rmd' using rmarkdown

Quitting from lines 29-42 [Running Seurat pipeline] (fcoex_and_seurat.Rmd)
Error: processing vignette 'fcoex_and_seurat.Rmd' failed with diagnostics:
cannot xtfrm data frames
--- failed re-building 'fcoex_and_seurat.Rmd'

SUMMARY: processing the following files failed:
  'fcoex.Rmd' 'fcoex_and_seurat.Rmd'

Error: Vignette re-building failed.
Execution halted