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This page was generated on 2024-03-29 11:35:56 -0400 (Fri, 29 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4669
palomino4Windows Server 2022 Datacenterx644.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" 4404
merida1macOS 12.7.1 Montereyx86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4427
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 684/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
extraChIPs 1.6.1  (landing page)
Stephen Pederson
Snapshot Date: 2024-03-27 14:05:05 -0400 (Wed, 27 Mar 2024)
git_url: https://git.bioconductor.org/packages/extraChIPs
git_branch: RELEASE_3_18
git_last_commit: fb27d0b
git_last_commit_date: 2024-02-27 06:23:59 -0400 (Tue, 27 Feb 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.1 Ventura / arm64see weekly results here

INSTALL results for extraChIPs on nebbiolo2


To the developers/maintainers of the extraChIPs package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/extraChIPs.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: extraChIPs
Version: 1.6.1
Command: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD INSTALL extraChIPs
StartedAt: 2024-03-27 15:34:42 -0400 (Wed, 27 Mar 2024)
EndedAt: 2024-03-27 15:35:43 -0400 (Wed, 27 Mar 2024)
EllapsedTime: 61.4 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD INSTALL extraChIPs
###
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* installing to library ‘/home/biocbuild/bbs-3.18-bioc/R/site-library’
* installing *source* package ‘extraChIPs’ ...
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
gcc -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c FMStable.c -o FMStable.o
FMStable.c: In function ‘setalpha’:
FMStable.c:4835:22: warning: unused variable ‘sinhalfangle’ [-Wunused-variable]
 4835 |     double sinangle, sinhalfangle;
      |                      ^~~~~~~~~~~~
FMStable.c: In function ‘tailsMSS’:
FMStable.c:4924:21: warning: unused variable ‘temp’ [-Wunused-variable]
 4924 |     double z,y,dy,t,temp,scale;
      |                     ^~~~
At top level:
FMStable.c:231:35: warning: ‘alphalarge’ defined but not used [-Wunused-variable]
  231 | static int distributiontabulated, alphalarge;
      |                                   ^~~~~~~~~~
FMStable.c:227:52: warning: ‘C4’ defined but not used [-Wunused-variable]
  227 | static double Clogd,alphastar,ratio,angle,C1,C2,C3,C4,eta;
      |                                                    ^~
FMStable.c:227:49: warning: ‘C3’ defined but not used [-Wunused-variable]
  227 | static double Clogd,alphastar,ratio,angle,C1,C2,C3,C4,eta;
      |                                                 ^~
FMStable.c:227:46: warning: ‘C2’ defined but not used [-Wunused-variable]
  227 | static double Clogd,alphastar,ratio,angle,C1,C2,C3,C4,eta;
      |                                              ^~
FMStable.c:227:43: warning: ‘C1’ defined but not used [-Wunused-variable]
  227 | static double Clogd,alphastar,ratio,angle,C1,C2,C3,C4,eta;
      |                                           ^~
FMStable.c:227:37: warning: ‘angle’ defined but not used [-Wunused-variable]
  227 | static double Clogd,alphastar,ratio,angle,C1,C2,C3,C4,eta;
      |                                     ^~~~~
FMStable.c:227:31: warning: ‘ratio’ defined but not used [-Wunused-variable]
  227 | static double Clogd,alphastar,ratio,angle,C1,C2,C3,C4,eta;
      |                               ^~~~~
gcc -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c init.c -o init.o
gcc -shared -L/home/biocbuild/bbs-3.18-bioc/R/lib -L/usr/local/lib -o extraChIPs.so FMStable.o init.o -L/home/biocbuild/bbs-3.18-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.18-bioc/R/site-library/00LOCK-extraChIPs/00new/extraChIPs/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (extraChIPs)