Back to Multiple platform build/check report for BioC 3.18: simplified long |
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This page was generated on 2024-03-29 11:37:38 -0400 (Fri, 29 Mar 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4669 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" | 4404 |
merida1 | macOS 12.7.1 Monterey | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4427 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 480/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
cyanoFilter 1.10.0 (landing page) Oluwafemi Olusoji
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
To the developers/maintainers of the cyanoFilter package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cyanoFilter.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: cyanoFilter |
Version: 1.10.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings cyanoFilter_1.10.0.tar.gz |
StartedAt: 2024-03-28 01:25:15 -0400 (Thu, 28 Mar 2024) |
EndedAt: 2024-03-28 01:28:30 -0400 (Thu, 28 Mar 2024) |
EllapsedTime: 194.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: cyanoFilter.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings cyanoFilter_1.10.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.18-bioc/meat/cyanoFilter.Rcheck’ * using R version 4.3.3 (2024-02-29) * using platform: x86_64-apple-darwin20 (64-bit) * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.7.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘cyanoFilter/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘cyanoFilter’ version ‘1.10.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘cyanoFilter’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed gateFunc 20.108 0.900 17.687 ggpairsDens 6.689 0.203 7.301 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
cyanoFilter.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL cyanoFilter ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library’ * installing *source* package ‘cyanoFilter’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cyanoFilter)
cyanoFilter.Rcheck/cyanoFilter-Ex.timings
name | user | system | elapsed | |
MarginEvents | 1.671 | 0.112 | 1.884 | |
PhytoFilter | 1.473 | 0.167 | 1.751 | |
PhytopFilter | 1.415 | 0.093 | 1.600 | |
accTest | 0.821 | 0.053 | 0.923 | |
accuracy | 1.106 | 0.095 | 1.272 | |
cellmargin | 0.704 | 0.043 | 0.791 | |
clusterExtract | 2.120 | 0.078 | 2.315 | |
clusterExtractp | 1.896 | 0.080 | 2.090 | |
debrisNc | 0.737 | 0.095 | 0.879 | |
fullFlowframe-MarginEvents-method | 0.916 | 0.043 | 1.012 | |
fullFlowframe-PhytopFilter-method | 1.387 | 0.063 | 1.539 | |
fullFlowframe | 0.667 | 0.046 | 0.762 | |
gateFunc | 20.108 | 0.900 | 17.687 | |
ggpairsDens | 6.689 | 0.203 | 7.301 | |
ggplotDens | 1.033 | 0.049 | 1.475 | |
ggplotDens2 | 1.806 | 0.080 | 2.362 | |
goodfcs | 0.093 | 0.013 | 0.115 | |
is.DebrisFilter | 0.000 | 0.000 | 0.001 | |
is.MarginEvents | 0.001 | 0.001 | 0.001 | |
is.PhytopFilter | 0.000 | 0.000 | 0.002 | |
is.flowFrame | 0.000 | 0.001 | 0.001 | |
is.flowSet | 0.001 | 0.000 | 0.001 | |
lnTrans | 0.469 | 0.030 | 0.517 | |
newFlowframe | 0.527 | 0.205 | 0.770 | |
nona | 0.212 | 0.012 | 0.238 | |
noneg | 0.381 | 0.021 | 0.430 | |
oneDgate | 0.491 | 0.194 | 0.722 | |
pairsPlot | 2.906 | 0.230 | 3.321 | |
pigmentGate | 0.619 | 0.117 | 0.775 | |
reducedFlowframe-MarginEvents-method | 0.681 | 0.040 | 0.758 | |
reducedFlowframe | 0.694 | 0.044 | 0.788 | |
retain | 0.033 | 0.003 | 0.037 | |
rowNumbers | 0.493 | 0.137 | 0.668 | |
summaries-DebrisFilter-method | 0.962 | 0.049 | 1.063 | |
summaries-MarginEvents-method | 0.672 | 0.040 | 0.740 | |
summaries-PhytopFilter-method | 1.405 | 0.063 | 1.534 | |
summaries | 0.687 | 0.042 | 0.776 | |