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This page was generated on 2024-03-29 11:35:52 -0400 (Fri, 29 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4669
palomino4Windows Server 2022 Datacenterx644.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" 4404
merida1macOS 12.7.1 Montereyx86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4427
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 438/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
corral 1.12.0  (landing page)
Lauren Hsu
Snapshot Date: 2024-03-27 14:05:05 -0400 (Wed, 27 Mar 2024)
git_url: https://git.bioconductor.org/packages/corral
git_branch: RELEASE_3_18
git_last_commit: ff9dade
git_last_commit_date: 2023-10-24 11:23:12 -0400 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.1 Ventura / arm64see weekly results here

BUILD results for corral on nebbiolo2


To the developers/maintainers of the corral package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/corral.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: corral
Version: 1.12.0
Command: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data corral
StartedAt: 2024-03-27 16:38:20 -0400 (Wed, 27 Mar 2024)
EndedAt: 2024-03-27 16:39:46 -0400 (Wed, 27 Mar 2024)
EllapsedTime: 86.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data corral
###
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* checking for file ‘corral/DESCRIPTION’ ... OK
* preparing ‘corral’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘corral_dimred.Rmd’ using rmarkdown

Quitting from lines 53-59 [unnamed-chunk-1] (corral_dimred.Rmd)
Error: processing vignette 'corral_dimred.Rmd' failed with diagnostics:
package or namespace load failed for 'DuoClustering2018':
 .onLoad failed in loadNamespace() for 'DuoClustering2018', details:
  call: h(simpleError(msg, call))
  error: error in evaluating the argument 'x' in selecting a method for function 'query': failed to connect
  reason: Scanner error: mapping values are not allowed in this context at line 3, column 13
  Consider rerunning with 'localHub=TRUE'
--- failed re-building ‘corral_dimred.Rmd’

--- re-building ‘corralm_alignment.Rmd’ using rmarkdown
--- finished re-building ‘corralm_alignment.Rmd’

SUMMARY: processing the following file failed:
  ‘corral_dimred.Rmd’

Error: Vignette re-building failed.
Execution halted