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This page was generated on 2024-03-29 11:37:35 -0400 (Fri, 29 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4669
palomino4Windows Server 2022 Datacenterx644.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" 4404
merida1macOS 12.7.1 Montereyx86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4427
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 345/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
chromstaR 1.28.0  (landing page)
Aaron Taudt
Snapshot Date: 2024-03-27 14:05:05 -0400 (Wed, 27 Mar 2024)
git_url: https://git.bioconductor.org/packages/chromstaR
git_branch: RELEASE_3_18
git_last_commit: b61ea88
git_last_commit_date: 2023-10-24 10:51:00 -0400 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino4Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.6.1 Ventura / arm64see weekly results here

BUILD results for chromstaR on merida1


To the developers/maintainers of the chromstaR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/chromstaR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: chromstaR
Version: 1.28.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data chromstaR
StartedAt: 2024-03-27 17:43:06 -0400 (Wed, 27 Mar 2024)
EndedAt: 2024-03-27 17:48:45 -0400 (Wed, 27 Mar 2024)
EllapsedTime: 338.7 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data chromstaR
###
##############################################################################
##############################################################################


* checking for file ‘chromstaR/DESCRIPTION’ ... OK
* preparing ‘chromstaR’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘chromstaR.Rnw’ using knitr
2024-03-27 17:46:21.026 R[98431:1947248842] XType: com.apple.fonts is not accessible.
2024-03-27 17:46:21.026 R[98431:1947248842] XType: XTFontStaticRegistry is enabled.
2024-03-27 17:46:21.033 R[98434:1947248839] XType: com.apple.fonts is not accessible.
2024-03-27 17:46:21.033 R[98434:1947248839] XType: XTFontStaticRegistry is enabled.
2024-03-27 17:46:21.036 R[98432:1947248841] XType: com.apple.fonts is not accessible.
2024-03-27 17:46:21.036 R[98432:1947248841] XType: XTFontStaticRegistry is enabled.
2024-03-27 17:47:28.671 R[8872:1947277946] XType: com.apple.fonts is not accessible.
2024-03-27 17:47:28.672 R[8872:1947277946] XType: XTFontStaticRegistry is enabled.
2024-03-27 17:47:28.695 R[8874:1947277952] XType: com.apple.fonts is not accessible.
2024-03-27 17:47:28.695 R[8874:1947277952] XType: XTFontStaticRegistry is enabled.
2024-03-27 17:47:29.596 R[8875:1947277951] XType: com.apple.fonts is not accessible.
2024-03-27 17:47:29.596 R[8875:1947277951] XType: XTFontStaticRegistry is enabled.
2024-03-27 17:47:29.636 R[8873:1947277948] XType: com.apple.fonts is not accessible.
2024-03-27 17:47:29.636 R[8873:1947277948] XType: XTFontStaticRegistry is enabled.

Quitting from lines 377-396 [multivariate_combinatorial_enrichment] (chromstaR.Rnw)
Error: processing vignette 'chromstaR.Rnw' failed with diagnostics:
Unable to query any Ensembl site
--- failed re-building ‘chromstaR.Rnw’

SUMMARY: processing the following file failed:
  ‘chromstaR.Rnw’

Error: Vignette re-building failed.
Execution halted