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This page was generated on 2024-03-27 11:36:27 -0400 (Wed, 27 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4667
palomino4Windows Server 2022 Datacenterx644.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" 4403
merida1macOS 12.7.1 Montereyx86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4426
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 158/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
bgx 1.68.3  (landing page)
Ernest Turro
Snapshot Date: 2024-03-25 14:05:07 -0400 (Mon, 25 Mar 2024)
git_url: https://git.bioconductor.org/packages/bgx
git_branch: RELEASE_3_18
git_last_commit: a3843a5
git_last_commit_date: 2024-02-09 13:54:22 -0400 (Fri, 09 Feb 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.1 Ventura / arm64see weekly results here

INSTALL results for bgx on palomino4


To the developers/maintainers of the bgx package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/bgx.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: bgx
Version: 1.68.3
Command: F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL bgx
StartedAt: 2024-03-25 15:47:48 -0400 (Mon, 25 Mar 2024)
EndedAt: 2024-03-25 15:48:48 -0400 (Mon, 25 Mar 2024)
EllapsedTime: 60.5 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL bgx
###
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* installing to library 'F:/biocbuild/bbs-3.18-bioc/R/library'
* installing *source* package 'bgx' ...
** using staged installation
Untarring Boost header files...
tar: Ignoring unknown extended header keyword 'SCHILY.fflags'
** libs
Warning: this package has a non-empty 'configure.win' file,
so building only the main architecture

using C compiler: 'gcc.exe (GCC) 12.3.0'
using C++ compiler: 'G__~1.EXE (GCC) 12.3.0'
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I ../boostIncl -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rcpp/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"  -DUSING_R -ffast-math -O3   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c bgx.cc -o bgx.o
In file included from bgx.cc:32:
rand.hh: In member function 'RealType Rand<GenType, RealType>::Normal()':
rand.hh:399:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  399 |       if(u0<.5) return y; return -y;
      |       ^~
rand.hh:399:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  399 |       if(u0<.5) return y; return -y;
      |                           ^~~~~~
rand.hh:406:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  406 |       if(u0<.5) return y; return -y;
      |       ^~
rand.hh:406:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  406 |       if(u0<.5) return y; return -y;
      |                           ^~~~~~
rand.hh:413:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  413 |       if(u0<.5) return y; return -y;
      |       ^~
rand.hh:413:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  413 |       if(u0<.5) return y; return -y;
      |                           ^~~~~~
rand.hh:420:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  420 |     if(u0<.5) return y; return -y;
      |     ^~
rand.hh:420:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  420 |     if(u0<.5) return y; return -y;
      |                         ^~~~~~
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I ../boostIncl -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rcpp/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"  -DUSING_R -ffast-math -O3   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c bgx_frontend.cc -o bgx_frontend.o
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I ../boostIncl -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rcpp/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"  -DUSING_R -ffast-math -O3  -std=c99   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c qnorm.c -o qnorm.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I ../boostIncl -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rcpp/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"  -DUSING_R -ffast-math -O3   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c rundir.cc -o rundir.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I ../boostIncl -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rcpp/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"  -DUSING_R -ffast-math -O3   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c sokal.cc -o sokal.o
g++ -std=gnu++17 -shared -s -static-libgcc -o bgx.dll tmp.def bgx.o bgx_frontend.o qnorm.o rundir.o sokal.o -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.18-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.18-bioc/R/library/00LOCK-bgx/00new/bgx/libs/x64
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bgx)