############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data beadarray ### ############################################################################## ############################################################################## * checking for file ‘beadarray/DESCRIPTION’ ... OK * preparing ‘beadarray’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘ImageProcessing.rnw’ using knitr Error: processing vignette 'ImageProcessing.rnw' failed with diagnostics: Running 'texi2dvi' on 'ImageProcessing.tex' failed. LaTeX errors: ! Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... ! Emergency stop. ... l.64 ...}{rgb}{0.941, 0.941, 0.941}\color{fgcolor} \begin{kframe} ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘ImageProcessing.rnw’ --- re-building ‘beadarray.rnw’ using knitr Error: processing vignette 'beadarray.rnw' failed with diagnostics: Running 'texi2dvi' on 'beadarray.tex' failed. LaTeX errors: ! Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... ! Emergency stop. ... l.66 ...}{rgb}{0.941, 0.941, 0.941}\color{fgcolor} \begin{kframe} ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘beadarray.rnw’ --- re-building ‘beadlevel.rnw’ using knitr 2024-05-29 16:00:56.873 R[45763:1964963102] XType: com.apple.fonts is not accessible. 2024-05-29 16:00:56.873 R[45763:1964963102] XType: XTFontStaticRegistry is enabled. Error: processing vignette 'beadlevel.rnw' failed with diagnostics: Running 'texi2dvi' on 'beadlevel.tex' failed. LaTeX errors: ! Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... ! Emergency stop. ... l.58 ...}{rgb}{0.941, 0.941, 0.941}\color{fgcolor} \begin{kframe} ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘beadlevel.rnw’ --- re-building ‘beadsummary.rnw’ using knitr Error: processing vignette 'beadsummary.rnw' failed with diagnostics: Running 'texi2dvi' on 'beadsummary.tex' failed. LaTeX errors: ! Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... ! Emergency stop. ... l.65 ...}{rgb}{0.941, 0.941, 0.941}\color{fgcolor} \begin{kframe} ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘beadsummary.rnw’ SUMMARY: processing the following files failed: ‘ImageProcessing.rnw’ ‘beadarray.rnw’ ‘beadlevel.rnw’ ‘beadsummary.rnw’ Error: Vignette re-building failed. Execution halted