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### Running command:
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###   /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD check --install=check:annotationTools.install-out.txt --library=/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library --no-vignettes --timings annotationTools_1.78.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.19-bioc/meat/annotationTools.Rcheck’
* using R version 4.4.0 beta (2024-04-15 r86425)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    gcc (GCC) 10.3.1
    GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘annotationTools/DESCRIPTION’ ... OK
* this is package ‘annotationTools’ version ‘1.78.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘annotationTools’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) annot_HGU133A.Rd:4: Escaped LaTeX specials: \_
checkRd: (-1) getGENEID.Rd:20: Escaped LaTeX specials: \_ \_ \_
checkRd: (-1) getGENEONTOLOGY.Rd:21: Escaped LaTeX specials: \_ \_ \_
checkRd: (-1) getGENESYMBOL.Rd:20: Escaped LaTeX specials: \_ \_ \_
checkRd: (-1) getGENETITLE.Rd:20: Escaped LaTeX specials: \_ \_ \_
checkRd: (-1) getHOMOLOG.Rd:37: Escaped LaTeX specials: \_ \_
checkRd: (-1) getOrthologousProbesets.Rd:18: Escaped LaTeX specials: \_ \_
checkRd: (-1) getOrthologousProbesets.Rd:22: Escaped LaTeX specials: \_ \_
checkRd: (-1) getOrthologousProbesets.Rd:25: Escaped LaTeX specials: \_
checkRd: (-1) getOrthologousProbesets.Rd:26: Escaped LaTeX specials: \_
checkRd: (-1) getPROBESET.Rd:20: Escaped LaTeX specials: \_ \_ \_
checkRd: (-1) table_human.Rd:4: Escaped LaTeX specials: \_
checkRd: (-1) table_mouse.Rd:4: Escaped LaTeX specials: \_
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.19-bioc/meat/annotationTools.Rcheck/00check.log’
for details.