Multiple platform build/check report for BioC 3.18 - BUILD results for SummarizedBenchmark on palomino4

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.3.3 (2024-02-29) -- "Angel Food Cake"	4669
palomino4	Windows Server 2022 Datacenter	x64	4.3.3 (2024-02-29 ucrt) -- "Angel Food Cake"	4404
merida1	macOS 12.7.1 Monterey	x86_64	4.3.3 (2024-02-29) -- "Angel Food Cake"	4427
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

To the developers/maintainers of the SummarizedBenchmark package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SummarizedBenchmark.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

Summary

Package: SummarizedBenchmark

Version: 2.20.0

Command: chmod a+r SummarizedBenchmark -R && F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data SummarizedBenchmark

StartedAt: 2024-03-27 21:37:44 -0400 (Wed, 27 Mar 2024)

EndedAt: 2024-03-27 21:57:13 -0400 (Wed, 27 Mar 2024)

EllapsedTime: 1168.3 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   chmod a+r SummarizedBenchmark -R && F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data SummarizedBenchmark
###
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* checking for file 'SummarizedBenchmark/DESCRIPTION' ... OK
* preparing 'SummarizedBenchmark':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'CaseStudy-RNAseqQuantification.Rmd' using rmarkdown

Quitting from lines 243-268 [pcaPlot] (CaseStudy-RNAseqQuantification.Rmd)
Error: processing vignette 'CaseStudy-RNAseqQuantification.Rmd' failed with diagnostics:
The `legend.pos` theme element is not defined in the element hierarchy.
--- failed re-building 'CaseStudy-RNAseqQuantification.Rmd'

--- re-building 'CaseStudy-SingleCellSimulation.Rmd' using rmarkdown
--- finished re-building 'CaseStudy-SingleCellSimulation.Rmd'

--- re-building 'Feature-ErrorHandling.Rmd' using rmarkdown
--- finished re-building 'Feature-ErrorHandling.Rmd'

--- re-building 'Feature-Iterative.Rmd' using rmarkdown
--- finished re-building 'Feature-Iterative.Rmd'

--- re-building 'Feature-Parallel.Rmd' using rmarkdown
--- finished re-building 'Feature-Parallel.Rmd'

--- re-building 'SummarizedBenchmark-ClassDetails.Rmd' using rmarkdown
--- finished re-building 'SummarizedBenchmark-ClassDetails.Rmd'

--- re-building 'SummarizedBenchmark-FullCaseStudy.Rmd' using rmarkdown
--- finished re-building 'SummarizedBenchmark-FullCaseStudy.Rmd'

--- re-building 'SummarizedBenchmark-Introduction.Rmd' using rmarkdown
--- finished re-building 'SummarizedBenchmark-Introduction.Rmd'

SUMMARY: processing the following file failed:
  'CaseStudy-RNAseqQuantification.Rmd'

Error: Vignette re-building failed.
Execution halted