Back to Multiple platform build/check report for BioC 3.18:   simplified   long
ABCDEFGHIJKLMNOPQR[S]TUVWXYZ

This page was generated on 2024-03-29 11:38:15 -0400 (Fri, 29 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4669
palomino4Windows Server 2022 Datacenterx644.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" 4404
merida1macOS 12.7.1 Montereyx86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4427
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1938/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SGCP 1.2.0  (landing page)
Niloofar AghaieAbiane
Snapshot Date: 2024-03-27 14:05:05 -0400 (Wed, 27 Mar 2024)
git_url: https://git.bioconductor.org/packages/SGCP
git_branch: RELEASE_3_18
git_last_commit: 6900ac0
git_last_commit_date: 2023-10-24 11:45:56 -0400 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino4Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.6.1 Ventura / arm64see weekly results here

BUILD results for SGCP on merida1


To the developers/maintainers of the SGCP package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SGCP.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: SGCP
Version: 1.2.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SGCP
StartedAt: 2024-03-27 21:55:44 -0400 (Wed, 27 Mar 2024)
EndedAt: 2024-03-27 21:58:48 -0400 (Wed, 27 Mar 2024)
EllapsedTime: 184.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SGCP
###
##############################################################################
##############################################################################


* checking for file ‘SGCP/DESCRIPTION’ ... OK
* preparing ‘SGCP’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘SGCP.Rmd’ using rmarkdown
2024-03-27 21:58:40.100 R[32278:1953301865] XType: com.apple.fonts is not accessible.
2024-03-27 21:58:40.103 R[32278:1953301865] XType: XTFontStaticRegistry is enabled.

Quitting from lines 411-413 [unnamed-chunk-7] (SGCP.Rmd)
Error: processing vignette 'SGCP.Rmd' failed with diagnostics:
Problem while computing aesthetics.
ℹ Error occurred in the 1st layer.
Caused by error in `scales_add_defaults()`:
! could not find function "scales_add_defaults"
--- failed re-building ‘SGCP.Rmd’

SUMMARY: processing the following file failed:
  ‘SGCP.Rmd’

Error: Vignette re-building failed.
Execution halted