############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SCnorm ### ############################################################################## ############################################################################## * checking for file ‘SCnorm/DESCRIPTION’ ... OK * preparing ‘SCnorm’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘SCnorm.Rnw’ using knitr Error in parse(text = code, keep.source = FALSE) : :12:19: unexpected symbol 11: PrintProgressPlots = TRUE 12: FilterCellNum ^ Warning in highr::hilight(x, format, prompt = options$prompt, markup = opts$markup) : the syntax of the source code is invalid; the fallback mode is used Error: processing vignette 'SCnorm.Rnw' failed with diagnostics: Running 'texi2dvi' on 'SCnorm.tex' failed. LaTeX errors: ! Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... ! Emergency stop. ... l.82 ...}{rgb}{0.941, 0.941, 0.941}\color{fgcolor} \begin{kframe} ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘SCnorm.Rnw’ SUMMARY: processing the following file failed: ‘SCnorm.Rnw’ Error: Vignette re-building failed. Execution halted