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This page was generated on 2024-03-27 11:36:11 -0400 (Wed, 27 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4667
palomino4Windows Server 2022 Datacenterx644.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" 4403
merida1macOS 12.7.1 Montereyx86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4426
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1704/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RedeR 2.6.1  (landing page)
Mauro Castro
Snapshot Date: 2024-03-25 14:05:07 -0400 (Mon, 25 Mar 2024)
git_url: https://git.bioconductor.org/packages/RedeR
git_branch: RELEASE_3_18
git_last_commit: 0a91264
git_last_commit_date: 2024-03-10 15:49:52 -0400 (Sun, 10 Mar 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.1 Ventura / arm64see weekly results here

CHECK results for RedeR on nebbiolo2


To the developers/maintainers of the RedeR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RedeR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: RedeR
Version: 2.6.1
Command: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:RedeR.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings RedeR_2.6.1.tar.gz
StartedAt: 2024-03-26 01:39:08 -0400 (Tue, 26 Mar 2024)
EndedAt: 2024-03-26 01:39:51 -0400 (Tue, 26 Mar 2024)
EllapsedTime: 42.3 seconds
RetCode: 0
Status:   OK  
CheckDir: RedeR.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:RedeR.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings RedeR_2.6.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/RedeR.Rcheck’
* using R version 4.3.3 (2024-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘RedeR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RedeR’ version ‘2.6.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RedeR’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.6Mb
  sub-directories of 1Mb or more:
    data   3.2Mb
    java   1.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘RedeR.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.18-bioc/meat/RedeR.Rcheck/00check.log’
for details.



Installation output

RedeR.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD INSTALL RedeR
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.18-bioc/R/site-library’
* installing *source* package ‘RedeR’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RedeR)

Tests output


Example timings

RedeR.Rcheck/RedeR-Ex.timings

nameusersystemelapsed
RedPort-class0.0080.0000.008
RedPort0.0010.0000.002
RedeR.data0.4390.0200.458
addEdgeBetweenContainers0.2440.0000.243
addEdges0.0100.0000.009
addGraph0.0090.0000.009
addLegend0.0090.0000.008
addNodes0.0070.0000.008
att0.0720.0000.072
calld0.0010.0000.001
cea0.0450.0000.045
deSelectEdges0.0090.0000.008
deSelectGraph0.0080.0000.007
deSelectNodes0.0070.0000.007
deleteEdges0.0030.0040.007
deleteNodes0.0070.0000.007
deleteSelectedEdges0.0070.0000.007
deleteSelectedNodes0.0070.0000.008
exitd0.0010.0000.002
getContainerComponets0.010.000.01
getEdgeIDs0.0070.0000.008
getEdges0.0080.0000.007
getGraph0.0070.0000.007
getNodeIDs0.0070.0000.007
getNodes0.0060.0000.006
getSourceEdgeIDs0.0030.0040.007
getTargetEdgeIDs0.0070.0000.006
gtoy.rm000
isRelaxActive0.0000.0010.002
mergeNodes0.0050.0030.007
mergeOutEdges0.0100.0000.009
nestNodes0.010.000.01
nesthc0.9470.0831.032
new_launch_pipeline000
ping0.0010.0000.001
relax0.0090.0000.009
resetd0.0010.0000.002
selectAllEdges0.0070.0000.007
selectAllNodes0.0070.0000.007
selectEdges0.0070.0000.008
selectGraph0.0040.0040.007
selectNodes0.0080.0000.008
setArrowDirection0.0080.0000.008
subg0.0770.0040.081
updateContainerSize0.0090.0000.009
updateCoordXY0.0100.0000.009
updateGraph0.0090.0000.009
version0.0020.0000.001