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CHECK report for ROCpAI on tokay1

This page was generated on 2021-01-25 11:54:22 -0500 (Mon, 25 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE ROCpAI PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1564/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ROCpAI 1.2.0
Juan-Pedro Garcia
Snapshot Date: 2021-01-24 14:40:16 -0500 (Sun, 24 Jan 2021)
URL: https://git.bioconductor.org/packages/ROCpAI
Branch: RELEASE_3_12
Last Commit: 51f4b3c
Last Changed Date: 2020-10-27 11:54:46 -0500 (Tue, 27 Oct 2020)
malbec1 Linux (Ubuntu 18.04.5 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK 
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: ROCpAI
Version: 1.2.0
Command: C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ROCpAI.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings ROCpAI_1.2.0.tar.gz
StartedAt: 2021-01-25 06:36:45 -0500 (Mon, 25 Jan 2021)
EndedAt: 2021-01-25 06:39:51 -0500 (Mon, 25 Jan 2021)
EllapsedTime: 185.6 seconds
RetCode: 0
Status:  OK  
CheckDir: ROCpAI.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ROCpAI.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings ROCpAI_1.2.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.12-bioc/meat/ROCpAI.Rcheck'
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ROCpAI/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ROCpAI' version '1.2.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ROCpAI' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  'knitr'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'knitr'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'C:/Users/biocbuild/bbs-3.12-bioc/meat/ROCpAI.Rcheck/00check.log'
for details.



Installation output

ROCpAI.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/ROCpAI_1.2.0.tar.gz && rm -rf ROCpAI.buildbin-libdir && mkdir ROCpAI.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ROCpAI.buildbin-libdir ROCpAI_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL ROCpAI_1.2.0.zip && rm ROCpAI_1.2.0.tar.gz ROCpAI_1.2.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  9449  100  9449    0     0  35220      0 --:--:-- --:--:-- --:--:-- 35791

install for i386

* installing *source* package 'ROCpAI' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ROCpAI'
    finding HTML links ... done
    MCpAUCboot                              html  
    McpAUC                                  html  
    TpAUC                                   html  
    TpAUCboot                               html  
    pointsCurve                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ROCpAI' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ROCpAI' as ROCpAI_1.2.0.zip
* DONE (ROCpAI)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'ROCpAI' successfully unpacked and MD5 sums checked

Tests output


Example timings

ROCpAI.Rcheck/examples_i386/ROCpAI-Ex.timings

nameusersystemelapsed
MCpAUCboot0.590.280.90
McpAUC0.170.000.18
TpAUC0.150.000.14
TpAUCboot0.450.020.46
pointsCurve0.090.000.09

ROCpAI.Rcheck/examples_x64/ROCpAI-Ex.timings

nameusersystemelapsed
MCpAUCboot0.700.030.73
McpAUC0.720.000.72
TpAUC0.110.020.12
TpAUCboot0.360.060.43
pointsCurve0.070.000.07