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INSTALL report for RCM on tokay1

This page was generated on 2021-02-22 12:40:14 -0500 (Mon, 22 Feb 2021).

To the developers/maintainers of the RCM package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1471/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RCM 1.6.0
Joris Meys
Snapshot Date: 2021-02-21 14:52:07 -0500 (Sun, 21 Feb 2021)
URL: https://git.bioconductor.org/packages/RCM
Branch: RELEASE_3_12
Last Commit: 14befb4
Last Changed Date: 2020-10-27 11:41:34 -0500 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: RCM
Version: 1.6.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/RCM_1.6.0.tar.gz && rm -rf RCM.buildbin-libdir && mkdir RCM.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RCM.buildbin-libdir RCM_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL RCM_1.6.0.zip && rm RCM_1.6.0.tar.gz RCM_1.6.0.zip
StartedAt: 2021-02-21 18:31:02 -0500 (Sun, 21 Feb 2021)
EndedAt: 2021-02-21 18:32:24 -0500 (Sun, 21 Feb 2021)
EllapsedTime: 81.6 seconds
RetCode: 0
Status:   OK   

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/RCM_1.6.0.tar.gz && rm -rf RCM.buildbin-libdir && mkdir RCM.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RCM.buildbin-libdir RCM_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL RCM_1.6.0.zip && rm RCM_1.6.0.tar.gz RCM_1.6.0.zip
###
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100 2732k  100 2732k    0     0  43.4M      0 --:--:-- --:--:-- --:--:-- 46.8M

install for i386

* installing *source* package 'RCM' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'RCM'
    finding HTML links ... done
    JacCol_constr                           html  
    JacCol_constr_noLab                     html  
    LR_nb                                   html  
    LR_nb_Jac                               html  
    NBalphaInfl                             html  
    NBcolInfl                               html  
    NBjacobianAbunds                        html  
    NBjacobianCol                           html  
    NBjacobianColNP                         html  
    NBjacobianLibSizes                      html  
    NBjacobianPsi                           html  
    NBjacobianRow                           html  
    NBpsiInfl                               html  
    NBrowInfl                               html  
    RCM                                     html  
    RCM_NB                                  html  
    Zeller                                  html  
    addOrthProjection                       html  
    arrayprod                               html  
    buildCentMat                            html  
    buildConfMat                            html  
    buildConfMat.character                  html  
    buildConfMat.data.frame                 html  
    buildCovMat                             html  
    buildDesign                             html  
    checkAlias                              html  
    constrCorresp                           html  
    correctXMissingness                     html  
    dLR_nb                                  html  
    dNBabunds                               html  
    dNBlibSizes                             html  
    dNBllcol                                html  
    dNBllcolNP                              html  
    dNBllcol_constr                         html  
    dNBllcol_constr_noLab                   html  
    dNBllrow                                html  
    dNBpsis                                 html  
    deviances                               html  
    ellipseCoord                            html  
    estDisp                                 html  
    estNBparams                             html  
    estNBparamsNoLab                        html  
    estNPresp                               html  
    extractCoord                            html  
    extractE                                html  
    filterConfounders                       html  
    getDevMat                               html  
    getDevianceRes                          html  
    getInflCol                              html  
    getInflRow                              html  
    getInt                                  html  
    getLogLik                               html  
    getModelMat                             html  
    getRowMat                               html  
    heq_nb                                  html  
    heq_nb_jac                              html  
    indentPlot                              html  
    inertia                                 html  
    liks                                    html  
    plot.RCM                                html  
    plotRespFun                             html  
    residualPlot                            html  
    respFunJacMat                           html  
    respFunScoreMat                         html  
    rowMultiply                             html  
    seq_k                                   html  
    trimOnConfounders                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'RCM' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RCM' as RCM_1.6.0.zip
* DONE (RCM)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'RCM' successfully unpacked and MD5 sums checked