############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r R3CPET -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data R3CPET ### ############################################################################## ############################################################################## * checking for file 'R3CPET/DESCRIPTION' ... OK * preparing 'R3CPET': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'R3CPET.Rnw' using knitr !!! Error: Cannot call Ghostscript: `mgs' (No such file or directory/The system cannot find the file specified)! pdfcrop: major issue: User/administrator updates are out-of-sync. !!! Error: Cannot call Ghostscript: `mgs' (No such file or directory/The system cannot find the file specified)! pdfcrop: major issue: User/administrator updates are out-of-sync. !!! Error: Cannot call Ghostscript: `mgs' (No such file or directory/The system cannot find the file specified)! pdfcrop: major issue: User/administrator updates are out-of-sync. !!! Error: Cannot call Ghostscript: `mgs' (No such file or directory/The system cannot find the file specified)! pdfcrop: major issue: User/administrator updates are out-of-sync. !!! Error: Cannot call Ghostscript: `mgs' (No such file or directory/The system cannot find the file specified)! pdfcrop: major issue: User/administrator updates are out-of-sync. !!! Error: Cannot call Ghostscript: `mgs' (No such file or directory/The system cannot find the file specified)! pdfcrop: major issue: User/administrator updates are out-of-sync. texify: major issue: User/administrator updates are out-of-sync. Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "", : running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "R3CPET.tex" --max-iterations=20 -I "F:/biocbuild/bbs-3.19-bioc/R/share/texmf/tex/latex" -I "F:/biocbuild/bbs-3.19-bioc/R/share/texmf/bibtex/bst"' had status 1 Error: processing vignette 'R3CPET.Rnw' failed with diagnostics: running 'texi2dvi' on 'R3CPET.tex' failed LaTeX errors: s/R3CPET.tex:151: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/R3CPET.tex:170: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/R3CPET.tex:202: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/R3CPET.tex:224: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/R3CPET.tex:238: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/R3CPET.tex:254: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/R3CPET.tex:282: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/R3CPET.tex:329: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/R3CPET.tex:348: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/R3CPET.tex:367: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/R3CPET.tex:404: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/R3CPET.tex:412: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/R3CPET.tex:430: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/R3CPET.tex:448: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/R3CPET.tex:456: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/R3CPET.tex:474: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/R3CPET.tex:527: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/R3CPET.tex:586: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/R3CPET.tex:615: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/R3CPET.tex:623: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/R3CPET.tex:642: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/R3CPET.tex:656: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/R3CPET.tex:687: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/R3CPET.tex:710: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/R3CPET.tex:726: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/R3CPET.tex:749: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/R3CPET.tex:768: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/R3CPET.tex:786: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/R3CPET.tex:797: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/R3CPET.tex:829: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/R3CPET.tex:871: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... --- failed re-building 'R3CPET.Rnw' SUMMARY: processing the following file failed: 'R3CPET.Rnw' Error: Vignette re-building failed. Execution halted