Multiple platform build/check report for BioC 3.18 - BUILD results for PFP on palomino4

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This page was generated on 2024-03-29 11:37:06 -0400 (Fri, 29 Mar 2024).

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.3.3 (2024-02-29) -- "Angel Food Cake"	4669
palomino4	Windows Server 2022 Datacenter	x64	4.3.3 (2024-02-29 ucrt) -- "Angel Food Cake"	4404
merida1	macOS 12.7.1 Monterey	x86_64	4.3.3 (2024-02-29) -- "Angel Food Cake"	4427
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

~~PFP 1.10.0~~ (landing page)
XC Zhang

Snapshot Date: 2024-03-27 14:05:05 -0400 (Wed, 27 Mar 2024)

git_url: https://git.bioconductor.org/packages/PFP

git_branch: RELEASE_3_18

git_last_commit: d240458

git_last_commit_date: 2023-10-24 11:28:51 -0400 (Tue, 24 Oct 2023)

nebbiolo2

Linux (Ubuntu 22.04.3 LTS) / x86_64

ERROR

skipped

palomino4

Windows Server 2022 Datacenter / x64

ERROR

skipped

merida1

macOS 12.7.1 Monterey / x86_64

ERROR

skipped

kjohnson1

macOS 13.6.1 Ventura / arm64

see weekly results here

BUILD results for PFP on palomino4

To the developers/maintainers of the PFP package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/PFP.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: PFP

Version: 1.10.0

Command: chmod a+r PFP -R && F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data PFP

StartedAt: 2024-03-27 20:19:23 -0400 (Wed, 27 Mar 2024)

EndedAt: 2024-03-27 20:20:24 -0400 (Wed, 27 Mar 2024)

EllapsedTime: 61.5 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r PFP -R && F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data PFP
###
##############################################################################
##############################################################################


* checking for file 'PFP/DESCRIPTION' ... OK
* preparing 'PFP':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'PFP.Rmd' using rmarkdown

Quitting from lines 128-138 [a general-pipline] (PFP.Rmd)
Error: processing vignette 'PFP.Rmd' failed with diagnostics:
cannot xtfrm data frames
--- failed re-building 'PFP.Rmd'

SUMMARY: processing the following file failed:
  'PFP.Rmd'

Error: Vignette re-building failed.
Execution halted