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This page was generated on 2023-03-22 11:05:41 -0400 (Wed, 22 Mar 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4271
palomino4Windows Server 2022 Datacenterx644.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" 4214
lconwaymacOS 12.5.1 Montereyx86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4259
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for NxtIRFcore on palomino4


To the developers/maintainers of the NxtIRFcore package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/NxtIRFcore.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1371/2183HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
NxtIRFcore 1.4.0  (landing page)
Alex Chit Hei Wong
Snapshot Date: 2023-03-20 14:00:04 -0400 (Mon, 20 Mar 2023)
git_url: https://git.bioconductor.org/packages/NxtIRFcore
git_branch: RELEASE_3_16
git_last_commit: c38d908
git_last_commit_date: 2022-11-01 11:26:02 -0400 (Tue, 01 Nov 2022)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.5.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: NxtIRFcore
Version: 1.4.0
Command: rm -rf NxtIRFcore.buildbin-libdir && mkdir NxtIRFcore.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=NxtIRFcore.buildbin-libdir NxtIRFcore_1.4.0.tar.gz
StartedAt: 2023-03-21 08:57:06 -0400 (Tue, 21 Mar 2023)
EndedAt: 2023-03-21 08:59:18 -0400 (Tue, 21 Mar 2023)
EllapsedTime: 132.4 seconds
RetCode: 0
Status:   OK  
PackageFile: NxtIRFcore_1.4.0.zip
PackageFileSize: 3.341 MiB

Command output

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###
### Running command:
###
###   rm -rf NxtIRFcore.buildbin-libdir && mkdir NxtIRFcore.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=NxtIRFcore.buildbin-libdir NxtIRFcore_1.4.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'NxtIRFcore' ...
** using staged installation
** libs
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppProgress/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BAM2blocks.cpp -o BAM2blocks.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppProgress/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c FastaReader.cpp -o FastaReader.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppProgress/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c FragmentBlocks.cpp -o FragmentBlocks.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppProgress/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c GZTools.cpp -o GZTools.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppProgress/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c IRFinder.cpp -o IRFinder.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppProgress/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppProgress/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ReadBlockProcessor.cpp -o ReadBlockProcessor.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppProgress/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ReadBlockProcessor_CoverageBlocks.cpp -o ReadBlockProcessor_CoverageBlocks.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppProgress/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c covTools.cpp -o covTools.o
g++ -shared -s -static-libgcc -o NxtIRFcore.dll tmp.def BAM2blocks.o FastaReader.o FragmentBlocks.o GZTools.o IRFinder.o RcppExports.o ReadBlockProcessor.o ReadBlockProcessor_CoverageBlocks.o covTools.o -fopenmp -DRNXTIRF -LF:/biocbuild/bbs-3.16-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.16-bioc/meat/NxtIRFcore.buildbin-libdir/00LOCK-NxtIRFcore/00new/NxtIRFcore/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'NxtIRFcore' as NxtIRFcore_1.4.0.zip
* DONE (NxtIRFcore)