############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL MSstatsShiny ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.19-bioc/R/library' * installing *source* package 'MSstatsShiny' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'MSstats::SkylinetoMSstatsFormat' by 'MSstatsConvert::SkylinetoMSstatsFormat' when loading 'MSstatsShiny' Warning: replacing previous import 'MSstats::ProgenesistoMSstatsFormat' by 'MSstatsConvert::ProgenesistoMSstatsFormat' when loading 'MSstatsShiny' Warning: replacing previous import 'MSstats::SpectronauttoMSstatsFormat' by 'MSstatsConvert::SpectronauttoMSstatsFormat' when loading 'MSstatsShiny' Warning: replacing previous import 'MSstats::FragPipetoMSstatsFormat' by 'MSstatsConvert::FragPipetoMSstatsFormat' when loading 'MSstatsShiny' Warning: replacing previous import 'MSstats::DIAUmpiretoMSstatsFormat' by 'MSstatsConvert::DIAUmpiretoMSstatsFormat' when loading 'MSstatsShiny' Warning: replacing previous import 'MSstats::OpenMStoMSstatsFormat' by 'MSstatsConvert::OpenMStoMSstatsFormat' when loading 'MSstatsShiny' Warning: replacing previous import 'MSstats::MaxQtoMSstatsFormat' by 'MSstatsConvert::MaxQtoMSstatsFormat' when loading 'MSstatsShiny' Warning: replacing previous import 'MSstats::PDtoMSstatsFormat' by 'MSstatsConvert::PDtoMSstatsFormat' when loading 'MSstatsShiny' Warning: replacing previous import 'MSstats::OpenSWATHtoMSstatsFormat' by 'MSstatsConvert::OpenSWATHtoMSstatsFormat' when loading 'MSstatsShiny' Warning: replacing previous import 'MSstats::DIANNtoMSstatsFormat' by 'MSstatsConvert::DIANNtoMSstatsFormat' when loading 'MSstatsShiny' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'MSstats::SkylinetoMSstatsFormat' by 'MSstatsConvert::SkylinetoMSstatsFormat' when loading 'MSstatsShiny' Warning: replacing previous import 'MSstats::ProgenesistoMSstatsFormat' by 'MSstatsConvert::ProgenesistoMSstatsFormat' when loading 'MSstatsShiny' Warning: replacing previous import 'MSstats::SpectronauttoMSstatsFormat' by 'MSstatsConvert::SpectronauttoMSstatsFormat' when loading 'MSstatsShiny' Warning: replacing previous import 'MSstats::FragPipetoMSstatsFormat' by 'MSstatsConvert::FragPipetoMSstatsFormat' when loading 'MSstatsShiny' Warning: replacing previous import 'MSstats::DIAUmpiretoMSstatsFormat' by 'MSstatsConvert::DIAUmpiretoMSstatsFormat' when loading 'MSstatsShiny' Warning: replacing previous import 'MSstats::OpenMStoMSstatsFormat' by 'MSstatsConvert::OpenMStoMSstatsFormat' when loading 'MSstatsShiny' Warning: replacing previous import 'MSstats::MaxQtoMSstatsFormat' by 'MSstatsConvert::MaxQtoMSstatsFormat' when loading 'MSstatsShiny' Warning: replacing previous import 'MSstats::PDtoMSstatsFormat' by 'MSstatsConvert::PDtoMSstatsFormat' when loading 'MSstatsShiny' Warning: replacing previous import 'MSstats::OpenSWATHtoMSstatsFormat' by 'MSstatsConvert::OpenSWATHtoMSstatsFormat' when loading 'MSstatsShiny' Warning: replacing previous import 'MSstats::DIANNtoMSstatsFormat' by 'MSstatsConvert::DIANNtoMSstatsFormat' when loading 'MSstatsShiny' ** testing if installed package can be loaded from final location Warning: replacing previous import 'MSstats::SkylinetoMSstatsFormat' by 'MSstatsConvert::SkylinetoMSstatsFormat' when loading 'MSstatsShiny' Warning: replacing previous import 'MSstats::ProgenesistoMSstatsFormat' by 'MSstatsConvert::ProgenesistoMSstatsFormat' when loading 'MSstatsShiny' Warning: replacing previous import 'MSstats::SpectronauttoMSstatsFormat' by 'MSstatsConvert::SpectronauttoMSstatsFormat' when loading 'MSstatsShiny' Warning: replacing previous import 'MSstats::FragPipetoMSstatsFormat' by 'MSstatsConvert::FragPipetoMSstatsFormat' when loading 'MSstatsShiny' Warning: replacing previous import 'MSstats::DIAUmpiretoMSstatsFormat' by 'MSstatsConvert::DIAUmpiretoMSstatsFormat' when loading 'MSstatsShiny' Warning: replacing previous import 'MSstats::OpenMStoMSstatsFormat' by 'MSstatsConvert::OpenMStoMSstatsFormat' when loading 'MSstatsShiny' Warning: replacing previous import 'MSstats::MaxQtoMSstatsFormat' by 'MSstatsConvert::MaxQtoMSstatsFormat' when loading 'MSstatsShiny' Warning: replacing previous import 'MSstats::PDtoMSstatsFormat' by 'MSstatsConvert::PDtoMSstatsFormat' when loading 'MSstatsShiny' Warning: replacing previous import 'MSstats::OpenSWATHtoMSstatsFormat' by 'MSstatsConvert::OpenSWATHtoMSstatsFormat' when loading 'MSstatsShiny' Warning: replacing previous import 'MSstats::DIANNtoMSstatsFormat' by 'MSstatsConvert::DIANNtoMSstatsFormat' when loading 'MSstatsShiny' ** testing if installed package keeps a record of temporary installation path * DONE (MSstatsShiny)