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This page was generated on 2022-01-21 13:06:33 -0500 (Fri, 21 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4329
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4079
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4140
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for LinkHD on tokay2


To the developers/maintainers of the LinkHD package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/LinkHD.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1000/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
LinkHD 1.8.0  (landing page)
"Laura M Zingaretti"
Snapshot Date: 2022-01-20 01:55:04 -0500 (Thu, 20 Jan 2022)
git_url: https://git.bioconductor.org/packages/LinkHD
git_branch: RELEASE_3_14
git_last_commit: 308b647
git_last_commit_date: 2021-10-26 12:55:21 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: LinkHD
Version: 1.8.0
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:LinkHD.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings LinkHD_1.8.0.tar.gz
StartedAt: 2022-01-20 22:07:33 -0500 (Thu, 20 Jan 2022)
EndedAt: 2022-01-20 22:11:58 -0500 (Thu, 20 Jan 2022)
EllapsedTime: 264.5 seconds
RetCode: 0
Status:   OK  
CheckDir: LinkHD.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:LinkHD.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings LinkHD_1.8.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/LinkHD.Rcheck'
* using R version 4.1.2 (2021-11-01)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'LinkHD/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'LinkHD' version '1.8.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'LinkHD' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

LinkHD.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/LinkHD_1.8.0.tar.gz && rm -rf LinkHD.buildbin-libdir && mkdir LinkHD.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=LinkHD.buildbin-libdir LinkHD_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL LinkHD_1.8.0.zip && rm LinkHD_1.8.0.tar.gz LinkHD_1.8.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 42  871k   42  374k    0     0  1257k      0 --:--:-- --:--:-- --:--:-- 1255k
100  871k  100  871k    0     0  2122k      0 --:--:-- --:--:-- --:--:-- 2120k

install for i386

* installing *source* package 'LinkHD' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'LinkHD'
    finding HTML links ... done
    Compromise_matrix-methods               html  
    DataProcessing                          html  
    DistStatis-Class                        html  
    DistStatis-CompromisePlot               html  
    DistStatis-CorrelationPlot              html  
    DistStatis-GlobalPlot                   html  
    Euclid_Im-methods                       html  
    Inertia_RV-methods                      html  
    Inertia_comp-methods                    html  
    LinkData-LinkData                       html  
    OTU2Taxa-OTU2Taxa                       html  
    RQO-methods                             html  
    Read_Data                               html  
    Ruminotypes                             html  
    Taraoceans                              html  
    Trajectories-methods                    html  
    VarSelection-Class                      html  
    VarSelection                            html  
    VarTable-methods                        html  
    Var_coordinates-methods                 html  
    Variables-methods                       html  
    compromise_coords-methods               html  
    correl-methods                          html  
    dAB-dAB                                 html  
    sign_values-methods                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'LinkHD' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'LinkHD' as LinkHD_1.8.0.zip
* DONE (LinkHD)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'LinkHD' successfully unpacked and MD5 sums checked

Tests output


Example timings

LinkHD.Rcheck/examples_i386/LinkHD-Ex.timings

nameusersystemelapsed
Compromise_matrix-methods1.140.041.19
DataProcessing0.000.020.01
DistStatis-Class000
DistStatis-CompromisePlot0.560.050.61
DistStatis-CorrelationPlot0.600.000.59
DistStatis-GlobalPlot0.760.000.77
Euclid_Im-methods0.440.070.51
Inertia_RV-methods0.420.000.43
Inertia_comp-methods0.410.000.41
LinkData-LinkData0.430.000.44
OTU2Taxa-OTU2Taxa3.070.113.17
RQO-methods0.460.030.50
Read_Data000
Ruminotypes000
Taraoceans000
Trajectories-methods1.190.111.30
VarSelection-Class000
VarSelection1.860.031.89
VarTable-methods1.920.021.94
Var_coordinates-methods2.120.022.14
Variables-methods2.210.032.23
compromise_coords-methods0.950.000.96
correl-methods0.420.000.42
dAB-dAB0.830.000.83
sign_values-methods202

LinkHD.Rcheck/examples_x64/LinkHD-Ex.timings

nameusersystemelapsed
Compromise_matrix-methods1.060.061.13
DataProcessing0.010.000.01
DistStatis-Class000
DistStatis-CompromisePlot0.690.000.69
DistStatis-CorrelationPlot0.860.020.87
DistStatis-GlobalPlot0.860.010.87
Euclid_Im-methods0.940.020.96
Inertia_RV-methods0.390.000.39
Inertia_comp-methods0.390.000.39
LinkData-LinkData0.380.000.37
OTU2Taxa-OTU2Taxa3.200.143.35
RQO-methods0.410.010.42
Read_Data000
Ruminotypes000
Taraoceans000
Trajectories-methods0.680.100.78
VarSelection-Class000
VarSelection1.990.001.98
VarTable-methods2.530.012.55
Var_coordinates-methods2.100.002.09
Variables-methods2.080.002.08
compromise_coords-methods0.450.000.45
correl-methods0.440.000.44
dAB-dAB0.820.000.83
sign_values-methods1.970.001.97