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This page was generated on 2024-03-29 11:36:55 -0400 (Fri, 29 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4669
palomino4Windows Server 2022 Datacenterx644.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" 4404
merida1macOS 12.7.1 Montereyx86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4427
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1098/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
LinkHD 1.16.0  (landing page)
"Laura M Zingaretti"
Snapshot Date: 2024-03-27 14:05:05 -0400 (Wed, 27 Mar 2024)
git_url: https://git.bioconductor.org/packages/LinkHD
git_branch: RELEASE_3_18
git_last_commit: c153185
git_last_commit_date: 2023-10-24 11:17:23 -0400 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.1 Ventura / arm64see weekly results here

CHECK results for LinkHD on palomino4


To the developers/maintainers of the LinkHD package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/LinkHD.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: LinkHD
Version: 1.16.0
Command: F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:LinkHD.install-out.txt --library=F:\biocbuild\bbs-3.18-bioc\R\library --no-vignettes --timings LinkHD_1.16.0.tar.gz
StartedAt: 2024-03-28 02:11:03 -0400 (Thu, 28 Mar 2024)
EndedAt: 2024-03-28 02:14:56 -0400 (Thu, 28 Mar 2024)
EllapsedTime: 233.8 seconds
RetCode: 0
Status:   OK  
CheckDir: LinkHD.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:LinkHD.install-out.txt --library=F:\biocbuild\bbs-3.18-bioc\R\library --no-vignettes --timings LinkHD_1.16.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.18-bioc/meat/LinkHD.Rcheck'
* using R version 4.3.3 (2024-02-29 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
    gcc.exe (GCC) 12.3.0
    GNU Fortran (GCC) 12.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'LinkHD/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'LinkHD' version '1.16.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'LinkHD' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

LinkHD.Rcheck/00install.out

##############################################################################
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###
### Running command:
###
###   F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL LinkHD
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.18-bioc/R/library'
* installing *source* package 'LinkHD' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (LinkHD)

Tests output


Example timings

LinkHD.Rcheck/LinkHD-Ex.timings

nameusersystemelapsed
Compromise_matrix-methods0.560.150.72
DataProcessing0.010.000.02
DistStatis-Class000
DistStatis-CompromisePlot0.830.040.86
DistStatis-CorrelationPlot1.670.011.69
DistStatis-GlobalPlot0.820.020.82
Euclid_Im-methods0.50.00.5
Inertia_RV-methods0.530.000.53
Inertia_comp-methods0.460.010.47
LinkData-LinkData0.360.050.41
OTU2Taxa-OTU2Taxa2.850.052.90
RQO-methods0.320.030.35
Read_Data000
Ruminotypes0.000.010.01
Taraoceans000
Trajectories-methods1.590.251.84
VarSelection-Class000
VarSelection1.880.031.91
VarTable-methods2.290.042.33
Var_coordinates-methods2.220.012.23
Variables-methods2.170.062.24
compromise_coords-methods1.020.021.03
correl-methods0.300.030.33
dAB-dAB0.820.030.86
sign_values-methods1.820.001.81