Back to Multiple platform build/check report for BioC 3.18: simplified long |
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This page was generated on 2024-03-27 11:37:45 -0400 (Wed, 27 Mar 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4667 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" | 4403 |
merida1 | macOS 12.7.1 Monterey | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4426 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1098/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
LinkHD 1.16.0 (landing page) "Laura M Zingaretti"
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
To the developers/maintainers of the LinkHD package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/LinkHD.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: LinkHD |
Version: 1.16.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:LinkHD.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings LinkHD_1.16.0.tar.gz |
StartedAt: 2024-03-26 04:26:23 -0400 (Tue, 26 Mar 2024) |
EndedAt: 2024-03-26 04:33:33 -0400 (Tue, 26 Mar 2024) |
EllapsedTime: 429.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: LinkHD.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:LinkHD.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings LinkHD_1.16.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.18-bioc/meat/LinkHD.Rcheck’ * using R version 4.3.3 (2024-02-29) * using platform: x86_64-apple-darwin20 (64-bit) * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.7.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘LinkHD/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘LinkHD’ version ‘1.16.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘LinkHD’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed OTU2Taxa-OTU2Taxa 6.73 0.131 7.323 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
LinkHD.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL LinkHD ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library’ * installing *source* package ‘LinkHD’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (LinkHD)
LinkHD.Rcheck/LinkHD-Ex.timings
name | user | system | elapsed | |
Compromise_matrix-methods | 1.105 | 0.454 | 1.735 | |
DataProcessing | 0.013 | 0.004 | 0.018 | |
DistStatis-Class | 0.001 | 0.001 | 0.003 | |
DistStatis-CompromisePlot | 1.281 | 0.046 | 1.373 | |
DistStatis-CorrelationPlot | 2.294 | 0.075 | 2.520 | |
DistStatis-GlobalPlot | 1.622 | 0.087 | 2.251 | |
Euclid_Im-methods | 0.817 | 0.029 | 0.923 | |
Inertia_RV-methods | 0.822 | 0.035 | 0.911 | |
Inertia_comp-methods | 0.829 | 0.043 | 0.967 | |
LinkData-LinkData | 0.832 | 0.030 | 0.916 | |
OTU2Taxa-OTU2Taxa | 6.730 | 0.131 | 7.323 | |
RQO-methods | 0.811 | 0.028 | 0.880 | |
Read_Data | 0.000 | 0.000 | 0.001 | |
Ruminotypes | 0.001 | 0.002 | 0.004 | |
Taraoceans | 0.001 | 0.003 | 0.009 | |
Trajectories-methods | 1.660 | 1.236 | 3.462 | |
VarSelection-Class | 0.001 | 0.000 | 0.002 | |
VarSelection | 4.714 | 0.064 | 4.859 | |
VarTable-methods | 4.100 | 0.058 | 4.325 | |
Var_coordinates-methods | 4.073 | 0.061 | 4.336 | |
Variables-methods | 4.185 | 0.053 | 4.718 | |
compromise_coords-methods | 0.798 | 0.025 | 0.904 | |
correl-methods | 0.816 | 0.016 | 0.903 | |
dAB-dAB | 1.506 | 0.037 | 1.666 | |
sign_values-methods | 4.146 | 0.033 | 4.623 | |